Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004214A_C01 KMC004214A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565980.1| expressed protein; protein id: At2g42670.1, sup... 95 4e-19
gb|AAM61182.1| unknown [Arabidopsis thaliana] 95 4e-19
pir||G84856 hypothetical protein At2g42670 [imported] - Arabidop... 95 4e-19
ref|NP_191426.1| putative protein; protein id: At3g58670.1, supp... 84 1e-15
dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica ... 42 0.005
>ref|NP_565980.1| expressed protein; protein id: At2g42670.1, supported by cDNA:
113423. [Arabidopsis thaliana]
gi|20197959|gb|AAD21739.2| expressed protein
[Arabidopsis thaliana] gi|20198080|gb|AAM15389.1|
expressed protein [Arabidopsis thaliana]
Length = 241
Score = 95.1 bits (235), Expect = 4e-19
Identities = 42/61 (68%), Positives = 52/61 (84%)
Frame = -2
Query: 494 PYSSDNGRHCSYFQKSSRKDLPETLEMNGVTVSDVTWLEEFQPPDEFAIRRGLYRGPVIK 315
PYSS++ RHC+YF+KS R+DLP LE++G V+DVTWLEEFQPPD+F IRR YRGPVI+
Sbjct: 181 PYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDFVIRRIPYRGPVIR 240
Query: 314 T 312
T
Sbjct: 241 T 241
>gb|AAM61182.1| unknown [Arabidopsis thaliana]
Length = 241
Score = 95.1 bits (235), Expect = 4e-19
Identities = 42/61 (68%), Positives = 52/61 (84%)
Frame = -2
Query: 494 PYSSDNGRHCSYFQKSSRKDLPETLEMNGVTVSDVTWLEEFQPPDEFAIRRGLYRGPVIK 315
PYSS++ RHC+YF+KS R+DLP LE++G V+DVTWLEEFQPPD+F IRR YRGPVI+
Sbjct: 181 PYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDFVIRRIPYRGPVIR 240
Query: 314 T 312
T
Sbjct: 241 T 241
>pir||G84856 hypothetical protein At2g42670 [imported] - Arabidopsis thaliana
Length = 242
Score = 95.1 bits (235), Expect = 4e-19
Identities = 42/61 (68%), Positives = 52/61 (84%)
Frame = -2
Query: 494 PYSSDNGRHCSYFQKSSRKDLPETLEMNGVTVSDVTWLEEFQPPDEFAIRRGLYRGPVIK 315
PYSS++ RHC+YF+KS R+DLP LE++G V+DVTWLEEFQPPD+F IRR YRGPVI+
Sbjct: 182 PYSSEHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEEFQPPDDFVIRRIPYRGPVIR 241
Query: 314 T 312
T
Sbjct: 242 T 242
>ref|NP_191426.1| putative protein; protein id: At3g58670.1, supported by cDNA:
114412., supported by cDNA: gi_15293012 [Arabidopsis
thaliana] gi|11358151|pir||T49150 hypothetical protein
T20N10.20 - Arabidopsis thaliana
gi|7630062|emb|CAB88284.1| putative protein [Arabidopsis
thaliana] gi|15293013|gb|AAK93617.1| unknown protein
[Arabidopsis thaliana] gi|21536892|gb|AAM61224.1|
unknown [Arabidopsis thaliana]
gi|23296434|gb|AAN13116.1| unknown protein [Arabidopsis
thaliana]
Length = 242
Score = 83.6 bits (205), Expect = 1e-15
Identities = 39/61 (63%), Positives = 47/61 (76%), Gaps = 1/61 (1%)
Frame = -2
Query: 494 PYSSDNGRHCSYFQKSSRKDLPETLE-MNGVTVSDVTWLEEFQPPDEFAIRRGLYRGPVI 318
PYSS +GRHC+YF+KS DLP +E MNG +S+VTWLEE+QPPD F I R YRGPVI
Sbjct: 181 PYSSTHGRHCNYFRKSPMLDLPGEIEVMNGEVISNVTWLEEYQPPDNFVIWRVPYRGPVI 240
Query: 317 K 315
+
Sbjct: 241 R 241
>dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 41.6 bits (96), Expect = 0.005
Identities = 22/60 (36%), Positives = 29/60 (47%), Gaps = 1/60 (1%)
Frame = -2
Query: 494 PYSSDNGRHCSYFQKSSRKDLPETLEMNGVTVSD-VTWLEEFQPPDEFAIRRGLYRGPVI 318
PY +GRHC ++ SS P + + D WLEE +PPD F + Y GP I
Sbjct: 186 PYDDGSGRHCQHYNVSS--SAPSAGDSKPLPGDDGYAWLEECEPPDNFHLVGSTYMGPRI 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,235,509
Number of Sequences: 1393205
Number of extensions: 7618577
Number of successful extensions: 14996
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14987
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
