Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004213A_C01 KMC004213A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thali... 135 5e-31
emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis t... 135 5e-31
sp|P36428|SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precur... 135 5e-31
pir||D96538 cytosolic tRNA-Ala synthetase [imported] - Arabidops... 135 5e-31
ref|NP_175439.1| alanine--tRNA ligase, putative; protein id: At1... 135 5e-31
>pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana (fragment)
Length = 989
Score = 135 bits (339), Expect = 5e-31
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 VTKVMDQKGLSVMVFSTDKSTXKAVICAGVPEKGDKGK-LDVSEWLSNALEPLKGRCGKG 428
V+KVM++KG+S+MVFSTD+ST KAV+CAGVPEK D+ K LDV+EWL+ AL PLKGRCGKG
Sbjct: 899 VSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKG 958
Query: 427 KGGLATGQGTDASHVNEAMDFATKFASMKL 338
KGGLA+GQGTDAS V A+D A+ FASMKL
Sbjct: 959 KGGLASGQGTDASQVQAALDMASSFASMKL 988
>emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana]
Length = 1003
Score = 135 bits (339), Expect = 5e-31
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 VTKVMDQKGLSVMVFSTDKSTXKAVICAGVPEKGDKGK-LDVSEWLSNALEPLKGRCGKG 428
V+KVM++KG+S+MVFSTD+ST KAV+CAGVPEK D+ K LDV+EWL+ AL PLKGRCGKG
Sbjct: 913 VSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKG 972
Query: 427 KGGLATGQGTDASHVNEAMDFATKFASMKL 338
KGGLA+GQGTDAS V A+D A+ FASMKL
Sbjct: 973 KGGLASGQGTDASQVQAALDMASSFASMKL 1002
>sp|P36428|SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (Alanine--tRNA
ligase) (AlaRS)
Length = 1003
Score = 135 bits (339), Expect = 5e-31
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 VTKVMDQKGLSVMVFSTDKSTXKAVICAGVPEKGDKGK-LDVSEWLSNALEPLKGRCGKG 428
V+KVM++KG+S+MVFSTD+ST KAV+CAGVPEK D+ K LDV+EWL+ AL PLKGRCGKG
Sbjct: 913 VSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKG 972
Query: 427 KGGLATGQGTDASHVNEAMDFATKFASMKL 338
KGGLA+GQGTDAS V A+D A+ FASMKL
Sbjct: 973 KGGLASGQGTDASQVQAALDMASSFASMKL 1002
>pir||D96538 cytosolic tRNA-Ala synthetase [imported] - Arabidopsis thaliana
gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala
synthetase [Arabidopsis thaliana]
gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis
thaliana]
Length = 955
Score = 135 bits (339), Expect = 5e-31
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 VTKVMDQKGLSVMVFSTDKSTXKAVICAGVPEKGDKGK-LDVSEWLSNALEPLKGRCGKG 428
V+KVM++KG+S+MVFSTD+ST KAV+CAGVPEK D+ K LDV+EWL+ AL PLKGRCGKG
Sbjct: 865 VSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKG 924
Query: 427 KGGLATGQGTDASHVNEAMDFATKFASMKL 338
KGGLA+GQGTDAS V A+D A+ FASMKL
Sbjct: 925 KGGLASGQGTDASQVQAALDMASSFASMKL 954
>ref|NP_175439.1| alanine--tRNA ligase, putative; protein id: At1g50200.1 [Arabidopsis
thaliana]
Length = 1027
Score = 135 bits (339), Expect = 5e-31
Identities = 66/90 (73%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Frame = -1
Query: 604 VTKVMDQKGLSVMVFSTDKSTXKAVICAGVPEKGDKGK-LDVSEWLSNALEPLKGRCGKG 428
V+KVM++KG+S+MVFSTD+ST KAV+CAGVPEK D+ K LDV+EWL+ AL PLKGRCGKG
Sbjct: 937 VSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKG 996
Query: 427 KGGLATGQGTDASHVNEAMDFATKFASMKL 338
KGGLA+GQGTDAS V A+D A+ FASMKL
Sbjct: 997 KGGLASGQGTDASQVQAALDMASSFASMKL 1026
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,808,998
Number of Sequences: 1393205
Number of extensions: 10411126
Number of successful extensions: 24676
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24599
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
