Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004210A_C01 KMC004210A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704435.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
gb|AAC32661.1| N-acetylglucosaminyl transferase component Gpi1 [... 31 7.1
ref|NP_004195.2| phosphatidylinositol glycan, class Q isoform 2;... 31 7.1
emb|CAB56148.1| c407A10.1 (GPI1 (N-acetylglucosaminyl transferas... 31 7.1
ref|NP_683721.1| phosphatidylinositol glycan, class Q isoform 1;... 31 7.1
>ref|NP_704435.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499174|emb|CAD51254.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2651
Score = 33.5 bits (75), Expect = 1.4
Identities = 22/62 (35%), Positives = 30/62 (47%)
Frame = +2
Query: 143 SCSVRIAQGFSPIKVCVYKVDSYQYINFIIAFFDNCPHIHA*IRWWKIILCINALCNLIV 322
SC + + F PI +D+Y+Y+N I + F PHIH K I IN N +
Sbjct: 661 SCDNSLRENFFPIFT---NIDTYEYLNIITSLF--MPHIHP-SNIGKHIGNINLFINSFL 714
Query: 323 YC 328
YC
Sbjct: 715 YC 716
>gb|AAC32661.1| N-acetylglucosaminyl transferase component Gpi1 [Homo sapiens]
gi|2911142|dbj|BAA24948.1| GPI1 [Homo sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 192 CTKWTVINTSTSSLLSLITVHIYMHEFDGGR*YCVLMHSV 311
C TV + S +++L+T HIY G R YC+ +H +
Sbjct: 378 CLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGL 417
>ref|NP_004195.2| phosphatidylinositol glycan, class Q isoform 2;
N-acetylglucosaminyl transferase component Gpi1 [Homo
sapiens] gi|14336703|gb|AAK61235.1|AE006464_3
N-acetylglucosamyl transferase component GPI1 [Homo
sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 192 CTKWTVINTSTSSLLSLITVHIYMHEFDGGR*YCVLMHSV 311
C TV + S +++L+T HIY G R YC+ +H +
Sbjct: 378 CLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGL 417
>emb|CAB56148.1| c407A10.1 (GPI1 (N-acetylglucosaminyl transferase component)) [Homo
sapiens]
Length = 583
Score = 31.2 bits (69), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 192 CTKWTVINTSTSSLLSLITVHIYMHEFDGGR*YCVLMHSV 311
C TV + S +++L+T HIY G R YC+ +H +
Sbjct: 380 CLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGL 419
>ref|NP_683721.1| phosphatidylinositol glycan, class Q isoform 1;
N-acetylglucosaminyl transferase component Gpi1 [Homo
sapiens] gi|13623537|gb|AAH06377.1|AAH06377 Similar to
phosphatidylinositol glycan, class Q [Homo sapiens]
Length = 760
Score = 31.2 bits (69), Expect = 7.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 192 CTKWTVINTSTSSLLSLITVHIYMHEFDGGR*YCVLMHSV 311
C TV + S +++L+T HIY G R YC+ +H +
Sbjct: 378 CLGLTVALSLLSDIIALLTFHIYCFYVYGARLYCLKIHGL 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,051,584
Number of Sequences: 1393205
Number of extensions: 8068520
Number of successful extensions: 16439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16437
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
