Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004209A_C01 KMC004209A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD31717.1| putative nucleoid DNA-binding protein [Cicer ari... 201 1e-51
ref|NP_188636.1| hypothetical protein, 5' partial; protein id: A... 188 1e-47
gb|AAO41867.1| unknown protein [Arabidopsis thaliana] 188 1e-47
emb|CAA09458.1| hypothetical protein [Cicer arietinum] 138 1e-32
ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, ... 134 3e-31
>emb|CAD31717.1| putative nucleoid DNA-binding protein [Cicer arietinum]
Length = 144
Score = 201 bits (512), Expect = 1e-51
Identities = 94/109 (86%), Positives = 104/109 (95%)
Frame = -1
Query: 437 AYNAFRDAFITQTTNLPRASGVSIFDTCYDLFGFVSVRVPTVSFYFSGGPVLTLPARNFL 258
AY+AFRDAFI QTTNLPR+S VSIFDTCYDL+GFVSVRVPT+SFYF GGP+LTLPARNFL
Sbjct: 36 AYDAFRDAFIGQTTNLPRSSDVSIFDTCYDLYGFVSVRVPTISFYFLGGPILTLPARNFL 95
Query: 257 IPVDNVGTFCFAFAPSPSGLSIIGNIQQEGIEISIDQASGFVGFGPNVC 111
IPV++VGTFCFAFAPSPSGLSIIGNIQQEGIEIS+D +GFVGFGPN+C
Sbjct: 96 IPVNDVGTFCFAFAPSPSGLSIIGNIQQEGIEISVDGVNGFVGFGPNIC 144
>ref|NP_188636.1| hypothetical protein, 5' partial; protein id: At3g20015.1,
supported by cDNA: gi_14532701 [Arabidopsis thaliana]
Length = 386
Score = 188 bits (477), Expect = 1e-47
Identities = 90/109 (82%), Positives = 99/109 (90%)
Frame = -1
Query: 437 AYNAFRDAFITQTTNLPRASGVSIFDTCYDLFGFVSVRVPTVSFYFSGGPVLTLPARNFL 258
AY AFRD F +QT NLPRASGVSIFDTCYDL GFVSVRVPTVSFYF+ GPVLTLPARNFL
Sbjct: 278 AYVAFRDGFKSQTANLPRASGVSIFDTCYDLSGFVSVRVPTVSFYFTEGPVLTLPARNFL 337
Query: 257 IPVDNVGTFCFAFAPSPSGLSIIGNIQQEGIEISIDQASGFVGFGPNVC 111
+PVD+ GT+CFAFA SP+GLSIIGNIQQEGI++S D A+GFVGFGPNVC
Sbjct: 338 MPVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 386
>gb|AAO41867.1| unknown protein [Arabidopsis thaliana]
Length = 470
Score = 188 bits (477), Expect = 1e-47
Identities = 90/109 (82%), Positives = 99/109 (90%)
Frame = -1
Query: 437 AYNAFRDAFITQTTNLPRASGVSIFDTCYDLFGFVSVRVPTVSFYFSGGPVLTLPARNFL 258
AY AFRD F +QT NLPRASGVSIFDTCYDL GFVSVRVPTVSFYF+ GPVLTLPARNFL
Sbjct: 362 AYVAFRDGFKSQTANLPRASGVSIFDTCYDLSGFVSVRVPTVSFYFTEGPVLTLPARNFL 421
Query: 257 IPVDNVGTFCFAFAPSPSGLSIIGNIQQEGIEISIDQASGFVGFGPNVC 111
+PVD+ GT+CFAFA SP+GLSIIGNIQQEGI++S D A+GFVGFGPNVC
Sbjct: 422 MPVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 470
>emb|CAA09458.1| hypothetical protein [Cicer arietinum]
Length = 110
Score = 138 bits (348), Expect = 1e-32
Identities = 68/109 (62%), Positives = 79/109 (72%)
Frame = -1
Query: 437 AYNAFRDAFITQTTNLPRASGVSIFDTCYDLFGFVSVRVPTVSFYFSGGPVLTLPARNFL 258
AY + RDAF T NL A GV+IFDTCYDL SVRVPTVSF+F V LPA+N+L
Sbjct: 2 AYESVRDAFKRLTQNLRSAEGVAIFDTCYDLSSLRSVRVPTVSFHFGNDRVWDLPAKNYL 61
Query: 257 IPVDNVGTFCFAFAPSPSGLSIIGNIQQEGIEISIDQASGFVGFGPNVC 111
IPVD+ GTFCFAFAP+ S LSIIGN+QQ+G +S D A+ VGF PN C
Sbjct: 62 IPVDSDGTFCFAFAPTSSSLSIIGNVQQQGTRVSFDIANSLVGFSPNKC 110
>ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, supported by cDNA:
gi_20466515 [Arabidopsis thaliana]
gi|25518510|pir||D86385 hypothetical protein F2J7.6 -
Arabidopsis thaliana
gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical
protein [Arabidopsis thaliana]
gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis
thaliana] gi|23198172|gb|AAN15613.1| unknown protein
[Arabidopsis thaliana]
Length = 483
Score = 134 bits (337), Expect = 3e-31
Identities = 58/108 (53%), Positives = 83/108 (76%)
Frame = -1
Query: 434 YNAFRDAFITQTTNLPRASGVSIFDTCYDLFGFVSVRVPTVSFYFSGGPVLTLPARNFLI 255
YN+ RD+F+ T +L +A+GV++FDTCY+L +V VPTV+F+F GG +L LPA+N++I
Sbjct: 376 YNSLRDSFVKGTLDLEKAAGVAMFDTCYNLSAKTTVEVPTVAFHFPGGKMLALPAKNYMI 435
Query: 254 PVDNVGTFCFAFAPSPSGLSIIGNIQQEGIEISIDQASGFVGFGPNVC 111
PVD+VGTFC AFAP+ S L+IIGN+QQ+G ++ D A+ +GF N C
Sbjct: 436 PVDSVGTFCLAFAPTASSLAIIGNVQQQGTRVTFDLANSLIGFSSNKC 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,335,986
Number of Sequences: 1393205
Number of extensions: 9481748
Number of successful extensions: 21425
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 20943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21385
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
