Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004207A_C01 KMC004207A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_560909.1| hypothetical protein [Pyrobaculum aerophilum] g... 38 0.076
gb|AAO16207.1| scavenger receptor cysteine-rich type 1 protein C... 34 1.1
ref|NP_766497.1| RIKEN cDNA E430002D04; hypothetical protein B43... 34 1.1
ref|XP_146132.1| similar to Antigen WC1.1 precursor [Mus musculus] 34 1.1
ref|XP_219450.1| similar to deleted in malignant brain tumors 1 ... 34 1.4
>ref|NP_560909.1| hypothetical protein [Pyrobaculum aerophilum]
gi|18161838|gb|AAL65091.1| hypothetical protein
[Pyrobaculum aerophilum]
Length = 160
Score = 38.1 bits (87), Expect = 0.076
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = -1
Query: 356 IKFSLLFAADLLWI*AMEPPLIPATTATVPLPWLGFGDPEG*GLSGLVFMGSVLLGLFVF 177
+ FS A W + PP+I A+ A V + WL G+P G G+ + + G +LG FV+
Sbjct: 49 VYFSFKRALGERWFSRLGPPVIAASAAGVLMLWL--GEPLGAGVIAIAYFGEPVLGYFVY 106
>gb|AAO16207.1| scavenger receptor cysteine-rich type 1 protein CD163c-alpha
precursor [Mus musculus]
Length = 989
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 155 PSSNFGLGVDRSHELKCKKLTCNSLWACPSS 63
PSS GLG+ +KC+ L +LW CPS+
Sbjct: 704 PSSGAGLGISWVDNIKCRNLHNATLWQCPSA 734
>ref|NP_766497.1| RIKEN cDNA E430002D04; hypothetical protein B430307C05 [Mus
musculus] gi|26352924|dbj|BAC40092.1| unnamed protein
product [Mus musculus]
Length = 991
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 155 PSSNFGLGVDRSHELKCKKLTCNSLWACPSS 63
PSS GLG+ +KC+ L +LW CPS+
Sbjct: 704 PSSGAGLGISWVDNIKCRNLHNATLWQCPSA 734
>ref|XP_146132.1| similar to Antigen WC1.1 precursor [Mus musculus]
Length = 962
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 155 PSSNFGLGVDRSHELKCKKLTCNSLWACPSS 63
PSS GLG+ +KC+ L +LW CPS+
Sbjct: 746 PSSGAGLGISWVDNIKCRNLHNATLWQCPSA 776
>ref|XP_219450.1| similar to deleted in malignant brain tumors 1 isoform b precursor
[Homo sapiens] [Rattus norvegicus]
Length = 1962
Score = 33.9 bits (76), Expect = 1.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 155 PSSNFGLGVDRSHELKCKKLTCNSLWACPSS 63
PS GLG+ ++KC+KL +LW CPS+
Sbjct: 704 PSPGPGLGISWVDKIKCRKLHNATLWQCPSA 734
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,805,965
Number of Sequences: 1393205
Number of extensions: 10642211
Number of successful extensions: 37954
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 36625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37899
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
