Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004206A_C02 KMC004206A_c02
(747 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca] 181 1e-44
pir||T09116 voltage-dependent anion channel protein - spinach gi... 174 2e-42
sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein... 172 5e-42
pir||S46959 porin I, 36K - potato gi|1076680|pir||C55364 porin (... 172 5e-42
pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| p... 167 1e-40
>gb|AAD38145.1|AF139498_1 porin [Prunus armeniaca]
Length = 276
Score = 181 bits (458), Expect = 1e-44
Identities = 89/112 (79%), Positives = 99/112 (87%)
Frame = -2
Query: 743 THADLIASLTLNDKGDSLYASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPI 564
TH DLIASL LNDK D++ ASYYH VSPLTNTAVGAELSHSFSSNEN LTIGTQHALDP+
Sbjct: 165 THTDLIASLILNDKADTVTASYYHTVSPLTNTAVGAELSHSFSSNENSLTIGTQHALDPL 224
Query: 563 TLLKARVNHYGRASALIQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 408
T +K RVN+YGRASALIQHEW P++ ++ GEVDT AIEKSAK+GLALALKP
Sbjct: 225 TTVKGRVNNYGRASALIQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276
>pir||T09116 voltage-dependent anion channel protein - spinach
gi|1256259|gb|AAA96275.1| voltage-dependent anion
channel protein
Length = 276
Score = 174 bits (440), Expect = 2e-42
Identities = 86/112 (76%), Positives = 99/112 (87%)
Frame = -2
Query: 743 THADLIASLTLNDKGDSLYASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPI 564
T+ DLIAS+ +NDK D L ASYYH+VSPLTNTAVGAELSHSFSSNEN L IGTQHALDP+
Sbjct: 165 TNDDLIASVNVNDKLDILNASYYHIVSPLTNTAVGAELSHSFSSNENTLNIGTQHALDPL 224
Query: 563 TLLKARVNHYGRASALIQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 408
T +KARVN+YG+ASALIQHEW P++ V++ GEVDT AIEKSAK+GLAL LKP
Sbjct: 225 TSVKARVNNYGKASALIQHEWRPKSIVTISGEVDTSAIEKSAKLGLALVLKP 276
>sp|P42056|POR6_SOLTU 36 kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) (POM 36) gi|515360|emb|CAA56600.1| 36kDA porin II
[Solanum tuberosum]
Length = 276
Score = 172 bits (436), Expect = 5e-42
Identities = 83/110 (75%), Positives = 97/110 (87%)
Frame = -2
Query: 737 ADLIASLTLNDKGDSLYASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPITL 558
+DLIASL LNDKGD++ ASYYH V P+TNTAVGAEL+HSFSSNEN LTIGTQH LDP+T
Sbjct: 167 SDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTT 226
Query: 557 LKARVNHYGRASALIQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 408
+KARVN YG+ASALIQHEW P++ ++ GEVDT AIEKSAK+GLA+ALKP
Sbjct: 227 VKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
>pir||S46959 porin I, 36K - potato gi|1076680|pir||C55364 porin (clone pPOM
36.1) - potato mitochondrion gi|515358|emb|CAA56601.1|
36kDa porin I [Solanum tuberosum]
Length = 276
Score = 172 bits (436), Expect = 5e-42
Identities = 83/110 (75%), Positives = 97/110 (87%)
Frame = -2
Query: 737 ADLIASLTLNDKGDSLYASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPITL 558
+DLIASL LNDKGD++ ASYYH V P+TNTAVGAEL+HSFSSNEN LTIGTQH LDP+T
Sbjct: 167 SDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTT 226
Query: 557 LKARVNHYGRASALIQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 408
+KARVN YG+ASALIQHEW P++ ++ GEVDT AIEKSAK+GLA+ALKP
Sbjct: 227 VKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276
>pir||T12558 porin - common ice plant gi|1724100|gb|AAB38498.1| porin
[Mesembryanthemum crystallinum]
Length = 276
Score = 167 bits (423), Expect = 1e-40
Identities = 79/111 (71%), Positives = 99/111 (89%)
Frame = -2
Query: 740 HADLIASLTLNDKGDSLYASYYHVVSPLTNTAVGAELSHSFSSNENILTIGTQHALDPIT 561
+ADLIASLTLNDKGD+L ASYYH +SPLT++AVGAE++HSFS+N+N +T+G QHA+DP+T
Sbjct: 166 NADLIASLTLNDKGDTLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLT 225
Query: 560 LLKARVNHYGRASALIQHEWNPRTRVSLVGEVDTGAIEKSAKVGLALALKP 408
LK RVN++G+A+ALIQHEW P++ V+ EVDT AIEKSAKVGLALALKP
Sbjct: 226 NLKGRVNNFGKATALIQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,432,343
Number of Sequences: 1393205
Number of extensions: 13281417
Number of successful extensions: 33663
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 32793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33652
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
