Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004205A_C01 KMC004205A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_326169.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25394564|p... 35 0.27
ref|NP_500724.1| Predicted CDS, putative nuclear protein, nemato... 33 0.79
ref|NP_690576.1| L protein [Dugbe virus] gi|3914897|sp|Q66431|RR... 32 1.4
ref|NP_757911.1| hypothetical protein [Mycoplasma penetrans] gi|... 32 2.3
ref|NP_230943.1| methyl-accepting chemotaxis protein [Vibrio cho... 32 2.3
>ref|NP_326169.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25394564|pir||B90554
lipoprotein [imported] - Mycoplasma pulmonis (strain UAB
CTIP) gi|14089752|emb|CAC13511.1| LIPOPROTEIN
[Mycoplasma pulmonis]
Length = 616
Score = 34.7 bits (78), Expect = 0.27
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 DSGEPLSMSKSFILNGFVRSLKQLQDVNSNLTKHK-KWRPNTHQNNQQW*QPEQNQK 341
DS E S F+L LK L+D N N+ K+ W+PN+ + Q W +P ++K
Sbjct: 160 DSQENFSKDSRFLLMNDFEDLK-LKDENGNIKKYSYTWKPNSVEELQNWLKPYLDRK 215
>ref|NP_500724.1| Predicted CDS, putative nuclear protein, nematode specific
[Caenorhabditis elegans] gi|7494665|pir||T30945
hypothetical protein AC7.3 - Caenorhabditis elegans
gi|1401356|gb|AAB03419.1| Hypothetical protein AC7.3
[Caenorhabditis elegans]
Length = 238
Score = 33.1 bits (74), Expect = 0.79
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 120 RFIDS*YPGSHSVENG-RGDSGEPLSMSKSFILNGFVRSLKQLQDVNSNLTKHKKWRPNT 296
R I + + +VEN G L + K+F N F LK+L D+ L K++K R
Sbjct: 80 RIIRPHFEAAIAVENETHGKIKTSLQLIKNFYSNEFEEKLKELSDLAPELEKYQKNRSTD 139
Query: 297 HQNNQQ 314
+ NQQ
Sbjct: 140 PEQNQQ 145
>ref|NP_690576.1| L protein [Dugbe virus] gi|3914897|sp|Q66431|RRPL_DUGBV RNA-directed
RNA polymerase (L protein) gi|747929|gb|AAB18834.1| L
protein
Length = 4036
Score = 32.3 bits (72), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 105 GICGSVSVLSLALCKLFIKPYYHKDN 28
G+ G + LSL + +F+KPY+ KDN
Sbjct: 3024 GLAGGIKELSLPIYTIFMKPYFFKDN 3049
>ref|NP_757911.1| hypothetical protein [Mycoplasma penetrans]
gi|26453985|dbj|BAC44315.1| hypothetical protein
[Mycoplasma penetrans]
Length = 121
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 243 LQDVNSNLTKHKKWRPNTHQNNQQW*QPEQNQKKGVVRSTHNIILTLRESLISYQ 407
L++ SN + W NT+++ QQW + +++QK+ +++ I L RE + +
Sbjct: 16 LKETFSNRQESIVWENNTNRSLQQWDETKESQKEKEMKNNLEIELRKREEQVKIE 70
>ref|NP_230943.1| methyl-accepting chemotaxis protein [Vibrio cholerae]
gi|11355660|pir||F82217 methyl-accepting chemotaxis
protein VC1298 [imported] - Vibrio cholerae (strain
N16961 serogroup O1) gi|9655786|gb|AAF94457.1|
methyl-accepting chemotaxis protein [Vibrio cholerae]
Length = 543
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +3
Query: 147 SHSVENGRGDSGEPLSMSKSFILNGFVRSLKQLQDVNSNLTKHKKWRPNTHQNNQQW*QP 326
SH +EN R D L++S + +++ SL+Q+QD + +L K N Q Q
Sbjct: 226 SHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTD---QA 282
Query: 327 EQNQKKGVVRSTHNI 371
NQ+K NI
Sbjct: 283 ANNQQKETAEVQTNI 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,475,188
Number of Sequences: 1393205
Number of extensions: 7524027
Number of successful extensions: 17780
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17773
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
