Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004203A_C01 KMC004203A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201248.1| putative protein; protein id: At5g64430.1, supp... 68 8e-11
ref|NP_200198.1| putative protein; protein id: At5g53870.1 [Arab... 52 5e-06
emb|CAD66637.1| phytocyanin protein, PUP2 [Arabidopsis thaliana] 52 6e-06
dbj|BAC58076.1| large tegument protein [Cercopithecine herpesvir... 49 5e-05
pir||JC6552 DNA topoisomerase (EC 5.99.1.2) - slime mold (Physar... 48 9e-05
>ref|NP_201248.1| putative protein; protein id: At5g64430.1, supported by cDNA:
gi_17064915, supported by cDNA: gi_20259929, supported
by cDNA: gi_20260125 [Arabidopsis thaliana]
gi|10178224|dbj|BAB11604.1| contains similarity to
unknown protein~gb|AAD14519.1~gene_id:T12B11.2
[Arabidopsis thaliana] gi|17064916|gb|AAL32612.1|
Unknown protein [Arabidopsis thaliana]
gi|20259930|gb|AAM13312.1| unknown protein [Arabidopsis
thaliana] gi|20260126|gb|AAM12961.1| unknown protein
[Arabidopsis thaliana]
Length = 513
Score = 68.2 bits (165), Expect = 8e-11
Identities = 63/175 (36%), Positives = 74/175 (42%), Gaps = 30/175 (17%)
Frame = -3
Query: 601 YWPEKQFPGEAFQTAAGG---GDQPVYLIQTQAPGTFYHAP-------VMRPPTT----- 467
+W PG F T G +QPVY+I + +P YHAP V+RP T
Sbjct: 316 FWQGNHNPGVVFPTTTHGLGLPEQPVYMIPSPSPSPVYHAPPPPQPQGVIRPILTGQVNQ 375
Query: 466 QGYY-AVQRMASDGYREQPVYGGMPPQNVGFSSAGPASLAPAQQVK---PSGYAEG---- 311
GYY VQR+ASD YRE P NV P AQQ + P + G
Sbjct: 376 GGYYPQVQRVASDTYREP----HQSPYNVAQPLQAPIGTKAAQQQQPPPPQPFTSGPPPP 431
Query: 310 -YGVVRP----TGVSDNVGGGAYAQVAYDSASGRQVYYTAQGGVVHAPP--YQGV 167
Y V P G+ D AY QV Y G+QVYYT APP Y GV
Sbjct: 432 QYTAVPPPRQVVGLPDT---SAYTQVTYTGGMGKQVYYT------EAPPPQYHGV 477
>ref|NP_200198.1| putative protein; protein id: At5g53870.1 [Arabidopsis thaliana]
gi|10177249|dbj|BAB10717.1| contains similarity to
phytocyanin/early nodulin-like protein~gene_id:K19P17.3
[Arabidopsis thaliana]
Length = 370
Score = 52.4 bits (124), Expect = 5e-06
Identities = 43/151 (28%), Positives = 67/151 (43%), Gaps = 7/151 (4%)
Frame = +1
Query: 160 HSPLLDTVARVQPHPAQYSKPVSHLHYHTPL-----ARTHHHRHYPTPQLA*-PRHTPPH 321
HSP + + P P +S SH HTP +H H P+ A P H+P H
Sbjct: 202 HSPATPSPSPKSPSPVSHSP--SHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAH 259
Query: 322 SPTA*PA-APVPSSPDPQTRTPHSAAACRHTPAVPGSHQKPFSAPRSTLASSEDASPARD 498
+P+ PA +P S P++ +P S+ A +PA P +P S+ + + A+P+
Sbjct: 260 APSHSPAHSPSHSPATPKSPSPSSSPA--QSPATPSPMTPQSPSPVSSPSPDQSAAPSDQ 317
Query: 499 RTFPAPASESGKPAGLLLRQPSGKPLRETAS 591
T AP+ P + P+ P +AS
Sbjct: 318 STPLAPSPSETTPTADNITAPAPSPRTNSAS 348
Score = 50.4 bits (119), Expect = 2e-05
Identities = 49/156 (31%), Positives = 63/156 (39%), Gaps = 5/156 (3%)
Frame = +1
Query: 145 PVSRQHSPLLDTVARVQPHPAQ---YSKPVSHLHYHTPLARTHHHRHYPTPQLA*PRHTP 315
PV+ +P R PAQ S P+SH TP L+ P H
Sbjct: 159 PVAPASAPSKSQPPRSSVSPAQPPKSSSPISH-----------------TPALS-PSHAT 200
Query: 316 PHSPTA*PAAPVPSSPDPQTRTP-HSAAAC-RHTPAVPGSHQKPFSAPRSTLASSEDASP 489
HSP +P P SP P + +P HS A H+PA SH P AP + A + SP
Sbjct: 201 SHSPAT--PSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHS-PAHAPSHSPAHAPSHSP 257
Query: 490 ARDRTFPAPASESGKPAGLLLRQPSGKPLRETASPA 597
A + S S PA PS P + A+P+
Sbjct: 258 AHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPATPS 293
Score = 37.7 bits (86), Expect = 0.12
Identities = 34/118 (28%), Positives = 49/118 (40%), Gaps = 8/118 (6%)
Frame = +1
Query: 274 HYPTPQLA*---PRHTPPHSPTA*PAAPVPSSPDPQT----RTPHSAAACRHTPAVPGSH 432
H P P ++ P+ P SP A +AP S P + + P S++ HTPA+ SH
Sbjct: 139 HSPVPSVSPTQPPKSHSPVSPVAPASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSH 198
Query: 433 QKPFSAPRSTLASSEDASPARDRTFPAPA-SESGKPAGLLLRQPSGKPLRETASPASN 603
S P + S + SP +PA + S PA P+ P A S+
Sbjct: 199 ATSHS-PATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSH 255
Score = 36.6 bits (83), Expect = 0.27
Identities = 46/182 (25%), Positives = 66/182 (35%), Gaps = 12/182 (6%)
Frame = +1
Query: 91 HRSLGNLVYHFTILPQAKPVSRQHSPLLDTVARVQPHPAQYSKPVSHLHYHTPLARTHHH 270
H G + + + +P + HSP+ +V+ QP P +S PVS P+A
Sbjct: 116 HCQKGQKLIVVVLAVRNQPSAPAHSPV-PSVSPTQP-PKSHS-PVS------PVA----- 161
Query: 271 RHYPTPQLA*PRHTPPHSPTA*PAAPVPSSPDPQTRTPHSAAACRHTPAVPGSHQK---- 438
P A + PP S + P SSP T + A H+PA P K
Sbjct: 162 -----PASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHSPATPSPSPKSPSP 216
Query: 439 --------PFSAPRSTLASSEDASPARDRTFPAPASESGKPAGLLLRQPSGKPLRETASP 594
P P + A + SPA + + S PA P+ P A+P
Sbjct: 217 VSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATP 276
Query: 595 AS 600
S
Sbjct: 277 KS 278
>emb|CAD66637.1| phytocyanin protein, PUP2 [Arabidopsis thaliana]
Length = 370
Score = 52.0 bits (123), Expect = 6e-06
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Frame = +1
Query: 160 HSPLLDTVARVQPHPAQYSKPVSHLHYHTPL-----ARTHHHRHYPTPQLA*-PRHTPPH 321
HSP + + P P +S SH HTP +H H P+ A P H+P H
Sbjct: 202 HSPATPSPSPKSPSPVSHSP--SHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAH 259
Query: 322 SPTA*PAAPVPSSP-DPQTRTPHSAAACRHTPAVPGSHQKPFSAPRSTLASSEDASPARD 498
+P+ PA SP P++ +P S+ A +PA P +P S+ + + A+P+
Sbjct: 260 APSHSPAHSXSHSPATPKSPSPSSSPA--QSPATPSPMTPQSPSPVSSPSPDQSAAPSDQ 317
Query: 499 RTFPAPASESGKPAGLLLRQPSGKPLRETAS 591
T AP+ P + P+ P +AS
Sbjct: 318 STPLAPSPSETTPTADNITAPAPSPRTNSAS 348
Score = 50.4 bits (119), Expect = 2e-05
Identities = 49/156 (31%), Positives = 63/156 (39%), Gaps = 5/156 (3%)
Frame = +1
Query: 145 PVSRQHSPLLDTVARVQPHPAQ---YSKPVSHLHYHTPLARTHHHRHYPTPQLA*PRHTP 315
PV+ +P R PAQ S P+SH TP L+ P H
Sbjct: 159 PVAPASAPSKSQPPRSSVSPAQPPKSSSPISH-----------------TPALS-PSHAT 200
Query: 316 PHSPTA*PAAPVPSSPDPQTRTP-HSAAAC-RHTPAVPGSHQKPFSAPRSTLASSEDASP 489
HSP +P P SP P + +P HS A H+PA SH P AP + A + SP
Sbjct: 201 SHSPAT--PSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHS-PAHAPSHSPAHAPSHSP 257
Query: 490 ARDRTFPAPASESGKPAGLLLRQPSGKPLRETASPA 597
A + S S PA PS P + A+P+
Sbjct: 258 AHAPSHSPAHSXSHSPATPKSPSPSSSPAQSPATPS 293
Score = 35.0 bits (79), Expect = 0.78
Identities = 45/175 (25%), Positives = 66/175 (37%), Gaps = 4/175 (2%)
Frame = +1
Query: 91 HRSLGNLVYHFTILPQAKPVSRQHSPLLDTVARVQPHPAQYSKPVSHLHYHTPLARTHHH 270
H G + + + +P + HSP+ +V+ QP P +S PVS P+A
Sbjct: 116 HCQKGQKLIVVVLAVRNQPSAPAHSPV-PSVSPTQP-PKSHS-PVS------PVA----- 161
Query: 271 RHYPTPQLA*PRHTPPHSPTA*PAAPVPSSPDPQTRTPHSAAACRHTPAVPGSHQKPFS- 447
P A + PP S + P SSP T + A H+PA P K S
Sbjct: 162 -----PASAPSKSQPPRSSVSPAQPPKSSSPISHTPALSPSHATSHSPATPSPSPKSPSP 216
Query: 448 ---APRSTLASSEDASPARDRTFPAPASESGKPAGLLLRQPSGKPLRETASPASN 603
+P + A + SPA + + S PA P+ P A S+
Sbjct: 217 VSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSXSH 271
>dbj|BAC58076.1| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3374
Score = 48.9 bits (115), Expect = 5e-05
Identities = 46/157 (29%), Positives = 59/157 (37%), Gaps = 1/157 (0%)
Frame = +1
Query: 130 LPQAKPVSRQHSPLLDTVARVQPHPAQYSKPVSHLHYHTPLARTHHHRHYPTPQLA*PRH 309
+P +P R P + + AR P Q ++P TP R P P A P
Sbjct: 2695 VPPPRPAPRPSEPAVQSRARRPDAPPQSARP------RTP-------RDDPGPPAA-PST 2740
Query: 310 TPPHSPTA*PAAPVPSSPDPQTRTPHSAAACRHTPAVPGSHQKPFSAPRSTLASSEDASP 489
PP P P P P PDP R P+ A P R+ +D +P
Sbjct: 2741 LPPSPPPPAPHPPDPPPPDPSPR-PNELGGGETAAAPSAPDPPPPQTVRAPERPRDDRAP 2799
Query: 490 ARDR-TFPAPASESGKPAGLLLRQPSGKPLRETASPA 597
A R + P AS G+PA P +P R A PA
Sbjct: 2800 APGRVSLPRRASRQGRPAP---SSPLQRPRRRAARPA 2833
Score = 40.0 bits (92), Expect = 0.024
Identities = 43/168 (25%), Positives = 61/168 (35%), Gaps = 12/168 (7%)
Frame = +1
Query: 133 PQAKPVSRQHSPLLDTVARV-QPHPAQYSKPVSHLHYHTPLARTHHHRHYPTPQLA*PRH 309
P +P R P + ++ + PHP P P A T P P A
Sbjct: 2821 PLQRPRRRAARPAVGSLTNLADPHPPGPETPTPTSPTANPHATTASATPAPPPVAA---- 2876
Query: 310 TPPHSPTA*PAAPVPS---------SPDPQTRTPHSAAACRHTPAVPGSHQKPFS--APR 456
T P PT+ PA P P+ P P +A A PA P + P + AP
Sbjct: 2877 TGPTRPTS-PATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPA 2935
Query: 457 STLASSEDASPARDRTFPAPASESGKPAGLLLRQPSGKPLRETASPAS 600
+ A + A+PA APA+ + A P+ +PA+
Sbjct: 2936 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAA 2983
Score = 38.9 bits (89), Expect = 0.054
Identities = 39/119 (32%), Positives = 48/119 (39%), Gaps = 6/119 (5%)
Frame = +1
Query: 202 PAQYSKPVSHLHYHTPLARTHHHRHYPTPQLA*PRHTP--PHSPTA*PAAPV---PSSPD 366
PA S+P + ++R+ P +LA PR TP P PT APV P+ P+
Sbjct: 3099 PAAPSRPPARRLARPAVSRSTESFALPPDELARPR-TPEAPAPPTETEEAPVAERPAPPE 3157
Query: 367 PQTRTPHSAAACRHTPAVPGSHQKPFSAPR-STLASSEDASPARDRTFPAPASESGKPA 540
P P S AA PA APR L A P R PAP E P+
Sbjct: 3158 PPQGRPPSPAAPDAGPAAASGPSGGVPAPRLGALVPGRVAVPRRQIPPPAPPREIPAPS 3216
Score = 37.4 bits (85), Expect = 0.16
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Frame = +1
Query: 271 RHYPTPQLA*PRHTPPHSPTA*PAAPVPSSPDPQTRTPHSAAACRHTPAVPGSHQKPFSA 450
RH TP P A P P P+S P P + A P PG+ P +
Sbjct: 434 RHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGA----PPTPGAPPTPGAP 489
Query: 451 PRS---TLASSEDASPARDRTFPA--PASESGKPAGLLLRQPSGKPLRETASP 594
P T ASSE +PA PA P + +G+P P+G+P P
Sbjct: 490 PTPAGPTTASSEPPTPAGRPPTPAGRPPTPAGRPP-----TPAGRPPTPAGRP 537
Score = 32.0 bits (71), Expect = 6.6
Identities = 29/87 (33%), Positives = 35/87 (39%)
Frame = +1
Query: 313 PPHSPTA*PAAPVPSSPDPQTRTPHSAAACRHTPAVPGSHQKPFSAPRSTLASSEDASPA 492
PP P A PAAP S P P+ S PAV ++P + P+S A
Sbjct: 2680 PPLPPAARPAAPDRSVPPPRPAPRPS------EPAVQSRARRPDAPPQS----------A 2723
Query: 493 RDRTFPAPASESGKPAGLLLRQPSGKP 573
R RT P + G PA PS P
Sbjct: 2724 RPRT---PRDDPGPPAAPSTLPPSPPP 2747
Score = 31.6 bits (70), Expect = 8.6
Identities = 30/97 (30%), Positives = 44/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 316 PHSPTA*PAAPV-PSSPD-PQTRTPHSAAACRHTPAVPGSHQKPFSAPRSTLASSEDASP 489
P +P A PAAP P++P P +A A PA P + P + P + A + A+P
Sbjct: 2940 PAAPAA-PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA-PAPAAVPAAPAAPAAPAAP 2997
Query: 490 ARDRTFPAPASESGKPAGLLLRQPSGKPLRETASPAS 600
A APA+ + PA P+ P+ A A+
Sbjct: 2998 AAPAAPAAPAAPAA-PAAPAAPAPAAVPVVVPAPTAT 3033
>pir||JC6552 DNA topoisomerase (EC 5.99.1.2) - slime mold (Physarum
polycephalum) gi|2642493|gb|AAC14193.1| DNA
topoisomerase I [Physarum polycephalum]
Length = 1015
Score = 48.1 bits (113), Expect = 9e-05
Identities = 49/156 (31%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Frame = +1
Query: 163 SPLLDTVARVQPHPAQYSKPVSHLHYHTPLARTHHHRHYPTPQLA*----PRHTPPHSPT 330
+P + V + P P SKP P+ P QLA P+ TP T
Sbjct: 15 TPETNGVDKAPPPPPAESKPSL-----PPITDDDEDDDIPLGQLAGRTAPPKPTPTTPTT 69
Query: 331 A*PAAPVP----SSPDPQTRTPHSAAACRHTPAVPGSHQ-KPFSAPRSTLASSED-ASPA 492
+ PAA P ++ P + TP AAA +PA P + KP +A A+S A PA
Sbjct: 70 SKPAATTPKPAATTSKPASTTPKPAAAIPKSPAKPAATTPKPAAAATGKPAASPSTAKPA 129
Query: 493 RDRTFPAPASESGKPAGLLLRQPSGKPLRETASPAS 600
T PA+ KPAG + KP T PA+
Sbjct: 130 A--TTSKPAASPAKPAGTAKPAGTAKPAATTPKPAA 163
Score = 45.4 bits (106), Expect = 6e-04
Identities = 43/134 (32%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Frame = +1
Query: 244 TPLARTHHHRHYPTPQLA*PRHTPPHSPTA*PAAPVPSSP-DPQTRTPHSAAACRHTPAV 420
TP T TP+ A + P S T PAA +P SP P TP AAA PA
Sbjct: 63 TPTTPTTSKPAATTPKPA-ATTSKPASTTPKPAAAIPKSPAKPAATTPKPAAAATGKPAA 121
Query: 421 PGSHQKPFSAPRSTLAS-SEDASPARDRTFPAPASESGKPAGLLLRQPS---------GK 570
S KP + AS ++ A A+ PA+ + KPA + S K
Sbjct: 122 SPSTAKPAATTSKPAASPAKPAGTAKPAGTAKPAATTPKPAAGAAKPASSTPKPAAGAAK 181
Query: 571 PLRETASPASNHQD 612
P T PA N D
Sbjct: 182 PAATTPKPAGNAND 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,615,062
Number of Sequences: 1393205
Number of extensions: 17992669
Number of successful extensions: 108253
Number of sequences better than 10.0: 1802
Number of HSP's better than 10.0 without gapping: 74580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99259
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
