Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004201A_C02 KMC004201A_c02
(1178 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK66161.1| pectate lyase [Fragaria x ananassa] 289 7e-77
ref|NP_567409.1| putative pectate lyase A11; protein id: At4g137... 266 6e-70
pir||T05240 pectate lyase (EC 4.2.2.2) A11 - Arabidopsis thalian... 266 6e-70
ref|NP_563715.1| putative pectate lyase A11; protein id: At1g046... 265 1e-69
gb|AAF19196.1|AF206320_1 pectate lyase 2 [Musa acuminata] 262 9e-69
>gb|AAK66161.1| pectate lyase [Fragaria x ananassa]
Length = 368
Score = 289 bits (739), Expect = 7e-77
Identities = 133/147 (90%), Positives = 143/147 (96%)
Frame = -2
Query: 1177 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQ 998
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGS +PTINSQ
Sbjct: 222 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ 281
Query: 997 GNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASS 818
GNRY AP NPFAKEVTKRVET+QT+W+GWNWRSEGDLLLNGA+FTPSGAGASA YARASS
Sbjct: 282 GNRYAAPTNPFAKEVTKRVETSQTQWRGWNWRSEGDLLLNGAFFTPSGAGASAVYARASS 341
Query: 817 LGAKSSSMVGTMTSNAGALGCRRGRSC 737
LGAKSS+MVGT+T++AGALGCRRGR+C
Sbjct: 342 LGAKSSAMVGTITASAGALGCRRGRTC 368
>ref|NP_567409.1| putative pectate lyase A11; protein id: At4g13710.1, supported by
cDNA: gi_15983435 [Arabidopsis thaliana]
gi|15983436|gb|AAL11586.1|AF424592_1 AT4g13710/F18A5_100
[Arabidopsis thaliana] gi|22655370|gb|AAM98277.1|
At4g13710/F18A5_100 [Arabidopsis thaliana]
Length = 470
Score = 266 bits (679), Expect = 6e-70
Identities = 124/147 (84%), Positives = 132/147 (89%)
Frame = -2
Query: 1177 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQ 998
DSYT+DK MQVTIAYNHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGS PTINSQ
Sbjct: 324 DSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ 383
Query: 997 GNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASS 818
GNRY AP++ FAKEVTKRVET +EWK WNWRSEGDLLLNGA+F PSGAGASASY RASS
Sbjct: 384 GNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASS 443
Query: 817 LGAKSSSMVGTMTSNAGALGCRRGRSC 737
L AK SSMV T+TS AGALGCR+GR C
Sbjct: 444 LAAKPSSMVDTITSTAGALGCRKGRPC 470
>pir||T05240 pectate lyase (EC 4.2.2.2) A11 - Arabidopsis thaliana (fragment)
gi|25320900|pir||H85148 probable pectate lyase A11
(partial) [imported] - Arabidopsis thaliana
gi|4455300|emb|CAB36835.1| putative pectate lyase A11
(fragment) [Arabidopsis thaliana]
gi|7268075|emb|CAB78413.1| putative pectate lyase A11
(fragment) [Arabidopsis thaliana]
Length = 374
Score = 266 bits (679), Expect = 6e-70
Identities = 124/147 (84%), Positives = 132/147 (89%)
Frame = -2
Query: 1177 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQ 998
DSYT+DK MQVTIAYNHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGS PTINSQ
Sbjct: 228 DSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ 287
Query: 997 GNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASS 818
GNRY AP++ FAKEVTKRVET +EWK WNWRSEGDLLLNGA+F PSGAGASASY RASS
Sbjct: 288 GNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASS 347
Query: 817 LGAKSSSMVGTMTSNAGALGCRRGRSC 737
L AK SSMV T+TS AGALGCR+GR C
Sbjct: 348 LAAKPSSMVDTITSTAGALGCRKGRPC 374
>ref|NP_563715.1| putative pectate lyase A11; protein id: At1g04680.1, supported by
cDNA: 37952., supported by cDNA: gi_15809865, supported
by cDNA: gi_18086432 [Arabidopsis thaliana]
gi|25320899|pir||F86179 hypothetical protein [imported] -
Arabidopsis thaliana gi|2494113|gb|AAB80622.1| Strong
similarity to Musa pectate lyase (gb|X92943). ESTs
gb|AA042458, gb|ATTS4502, gb|N38552 come from this gene.
[Arabidopsis thaliana] gi|18086433|gb|AAL57671.1|
At1g04680/T1G11_6 [Arabidopsis thaliana]
gi|21593312|gb|AAM65261.1| putative pectate lyase A11
[Arabidopsis thaliana]
Length = 431
Score = 265 bits (677), Expect = 1e-69
Identities = 125/147 (85%), Positives = 130/147 (88%)
Frame = -2
Query: 1177 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQ 998
DSY RDK MQVTIAYNHFG GLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGS NPTINSQ
Sbjct: 283 DSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ 342
Query: 997 GNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASS 818
GNRY AP NPFAKEVTKRV+T + WKGWNWRSEGDLL NGAYFT SGA AS SYARASS
Sbjct: 343 GNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASS 402
Query: 817 LGAKSSSMVGTMTSNAGALGCRRGRSC 737
L AKSSS+VG +TS+AGAL CRRGR C
Sbjct: 403 LSAKSSSLVGHITSDAGALPCRRGRQC 429
>gb|AAF19196.1|AF206320_1 pectate lyase 2 [Musa acuminata]
Length = 454
Score = 262 bits (669), Expect = 9e-69
Identities = 122/147 (82%), Positives = 130/147 (87%)
Frame = -2
Query: 1177 DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQ 998
DSY RD MQVTIA+NHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGS NPTINSQ
Sbjct: 308 DSYARDSIMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ 367
Query: 997 GNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASS 818
GNRY AP NPFAKEVTKRV+T Q+ WK WNWRSEGDLLLNGA+FTPSGAGASASYARASS
Sbjct: 368 GNRYLAPTNPFAKEVTKRVDTDQSTWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASS 427
Query: 817 LGAKSSSMVGTMTSNAGALGCRRGRSC 737
GAK SS+V T+TS+AG L C+ G C
Sbjct: 428 FGAKPSSLVDTLTSDAGVLSCQVGTRC 454
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,076,769,601
Number of Sequences: 1393205
Number of extensions: 25550104
Number of successful extensions: 76525
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 68414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75752
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 73301812074
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
