Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004200A_C01 KMC004200A_c01
(1097 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188478.1| putative chloroplast nucleoid DNA-binding prote... 241 2e-62
gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein... 241 2e-62
ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, ... 240 3e-62
dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein ... 232 7e-60
gb|AAO41867.1| unknown protein [Arabidopsis thaliana] 193 5e-48
>ref|NP_188478.1| putative chloroplast nucleoid DNA-binding protein; protein id:
At3g18490.1 [Arabidopsis thaliana]
gi|11994113|dbj|BAB01116.1| CND41, chloroplast nucleoid
DNA binding protein-like [Arabidopsis thaliana]
gi|23297732|gb|AAN13013.1| putative chloroplast nucleoid
DNA-binding protein [Arabidopsis thaliana]
Length = 500
Score = 241 bits (614), Expect = 2e-62
Identities = 113/173 (65%), Positives = 145/173 (83%), Gaps = 1/173 (0%)
Frame = -2
Query: 1084 GDSVTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAITRL 905
G TAPLL+N+KI TFYYV L+G SVGG+ V +P F++D +G+GG+I+D GTA+TRL
Sbjct: 328 GGDATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRL 387
Query: 904 RTQAYNSVRDAFRRLTQNLRS-AEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSLPA 728
+TQAYNS+RDAF +LT NL+ + ++LFDTCYD S+L +V+VPTV+ HF+GGK+ LPA
Sbjct: 388 QTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPA 447
Query: 727 KNYLIPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC 569
KNYLIPVD +GTFCFAFAPT+SSLSIIGNVQQQGTR+++DL+KN +G S NKC
Sbjct: 448 KNYLIPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
>gb|AAL87345.1| putative chloroplast nucleoid DNA-binding protein [Arabidopsis
thaliana]
Length = 500
Score = 241 bits (614), Expect = 2e-62
Identities = 113/173 (65%), Positives = 145/173 (83%), Gaps = 1/173 (0%)
Frame = -2
Query: 1084 GDSVTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAITRL 905
G TAPLL+N+KI TFYYV L+G SVGG+ V +P F++D +G+GG+I+D GTA+TRL
Sbjct: 328 GGDATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRL 387
Query: 904 RTQAYNSVRDAFRRLTQNLRS-AEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSLPA 728
+TQAYNS+RDAF +LT NL+ + ++LFDTCYD S+L +V+VPTV+ HF+GGK+ LPA
Sbjct: 388 QTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPA 447
Query: 727 KNYLIPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC 569
KNYLIPVD +GTFCFAFAPT+SSLSIIGNVQQQGTR+++DL+KN +G S NKC
Sbjct: 448 KNYLIPVDDSGTFCFAFAPTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
>ref|NP_173922.1| hypothetical protein; protein id: At1g25510.1, supported by cDNA:
gi_20466515 [Arabidopsis thaliana]
gi|25518510|pir||D86385 hypothetical protein F2J7.6 -
Arabidopsis thaliana
gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical
protein [Arabidopsis thaliana] gi|20466516|gb|AAM20575.1|
unknown protein [Arabidopsis thaliana]
gi|23198172|gb|AAN15613.1| unknown protein [Arabidopsis
thaliana]
Length = 483
Score = 240 bits (612), Expect = 3e-62
Identities = 112/171 (65%), Positives = 143/171 (83%)
Frame = -2
Query: 1081 DSVTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAITRLR 902
D+V APLL+N ++ TFYY+ LTG+SVGG+++ IP +FEMD++G+GGII+DSGTA+TRL+
Sbjct: 313 DAVVAPLLRNHQLDTFYYLGLTGISVGGELLQIPQSSFEMDESGSGGIIIDSGTAVTRLQ 372
Query: 901 TQAYNSVRDAFRRLTQNLRSAEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSLPAKN 722
T+ YNS+RD+F + T +L A GVA+FDTCY+LS +V VPTV+ HF GGK +LPAKN
Sbjct: 373 TEIYNSLRDSFVKGTLDLEKAAGVAMFDTCYNLSAKTTVEVPTVAFHFPGGKMLALPAKN 432
Query: 721 YLIPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC 569
Y+IPVDS GTFC AFAPT SSL+IIGNVQQQGTRV+FDLA + +GFS NKC
Sbjct: 433 YMIPVDSVGTFCLAFAPTASSLAIIGNVQQQGTRVTFDLANSLIGFSSNKC 483
>dbj|BAB21205.1| nucleoid DNA-binding protein cnd41-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 504
Score = 232 bits (592), Expect = 7e-60
Identities = 113/169 (66%), Positives = 136/169 (79%)
Frame = -2
Query: 1075 VTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAITRLRTQ 896
VTAPL+++ + TFYYV L+G+SVGGQ++ IPP F MD TGAGG+IVDSGTA+TRL++
Sbjct: 336 VTAPLIRSPRTSTFYYVGLSGLSVGGQILSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSS 395
Query: 895 AYNSVRDAFRRLTQNLRSAEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSLPAKNYL 716
AY ++RDAF R TQ+L GV+LFDTCYDLS SV VP VSL F+GG LPAKNYL
Sbjct: 396 AYAALRDAFVRGTQSLPRTSGVSLFDTCYDLSDRTSVEVPAVSLRFAGGGELRLPAKNYL 455
Query: 715 IPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC 569
IPVD AGT+C AFAPT +++SIIGNVQQQGTRVSFD AK+ VGF+ NKC
Sbjct: 456 IPVDGAGTYCLAFAPTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTTNKC 504
>gb|AAO41867.1| unknown protein [Arabidopsis thaliana]
Length = 470
Score = 193 bits (490), Expect = 5e-48
Identities = 92/175 (52%), Positives = 125/175 (70%)
Frame = -2
Query: 1093 ARPGDSVTAPLLKNQKIGTFYYVELTGVSVGGQMVGIPPETFEMDQTGAGGIIVDSGTAI 914
A P + PL++N + +FYYV L G+ VGG + +P F++ +TG GG+++D+GTA+
Sbjct: 296 ALPVGASWVPLVRNPRAPSFYYVGLKGLGVGGVRIPLPDGVFDLTETGDGGVVMDTGTAV 355
Query: 913 TRLRTQAYNSVRDAFRRLTQNLRSAEGVALFDTCYDLSTLQSVRVPTVSLHFSGGKTWSL 734
TRL T AY + RD F+ T NL A GV++FDTCYDLS SVRVPTVS +F+ G +L
Sbjct: 356 TRLPTAAYVAFRDGFKSQTANLPRASGVSIFDTCYDLSGFVSVRVPTVSFYFTEGPVLTL 415
Query: 733 PAKNYLIPVDSAGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLAKNEVGFSPNKC 569
PA+N+L+PVD +GT+CFAFA + + LSIIGN+QQ+G +VSFD A VGF PN C
Sbjct: 416 PARNFLMPVDDSGTYCFAFAASPTGLSIIGNIQQEGIQVSFDGANGFVGFGPNVC 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 974,393,111
Number of Sequences: 1393205
Number of extensions: 22902843
Number of successful extensions: 67738
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 62948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67380
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65889269280
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
