Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004197A_C01 KMC004197A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_593383.1| type ii proteins geranylgeranyltransferase beta... 32 3.4
>ref|NP_593383.1| type ii proteins geranylgeranyltransferase beta subunit
[Schizosaccharomyces pombe]
gi|1172707|sp|P46960|PTB1_SCHPO Type II proteins
geranylgeranyltransferase beta subunit (Type II protein
geranyl-geranyltransferase beta subunit)
(GGTase-II-beta) gi|2130200|pir||S65091
geranylgeranyltransferase type II beta chain - fission
yeast (Schizosaccharomyces pombe)
gi|1033066|emb|CAA63094.1| type II
geranylgeranyltransferase [Schizosaccharomyces pombe]
gi|4164399|emb|CAA22847.1| type ii proteins
geranylgeranyltransferase beta subunit
[Schizosaccharomyces pombe]
Length = 311
Score = 32.3 bits (72), Expect = 3.4
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 423 ATDF*LLHHTCFKLAGLATYIFINITPRDFKF 518
ATD ++HTCF LAGL+ F NI P D +F
Sbjct: 271 ATD---VYHTCFSLAGLSLLQFPNIEPVDPRF 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,896,058
Number of Sequences: 1393205
Number of extensions: 8576622
Number of successful extensions: 15539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15533
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
