Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004194A_C01 KMC004194A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86291 hypothetical protein F7H2.8 [imported] - Arabidopsis... 161 7e-39
gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana] 161 7e-39
gb|AAN13089.1| unknown protein [Arabidopsis thaliana] 161 7e-39
ref|NP_563980.1| expressed protein; protein id: At1g15740.1, sup... 161 7e-39
gb|AAN62335.1|AF506028_2 CTV.1 [Poncirus trifoliata] 97 2e-19
>pir||F86291 hypothetical protein F7H2.8 [imported] - Arabidopsis thaliana
gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity
to F-box protein FBL2 from Homo sapiens gb|AF176518 and
contains multiple Leucine Rich PF|00560 repeats. ESTs
gb|Z34572, gb|Z34571, gb|AI100681, gb|AI100675,
gb|AA395320, gb|AI100674, gb|AA651378, gb|AA007067,
gb|T46145, gb|T22090, gb|AI995016, gb|H36884,
gb|AI995066, gb|H37061, gb|T43537 come from this gene.
[Arabidopsis thaliana]
Length = 568
Score = 161 bits (407), Expect = 7e-39
Identities = 81/97 (83%), Positives = 92/97 (94%)
Frame = -2
Query: 589 GLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLK 410
GLTD+GVKNIKDLSSLT LNLSQNSNLTDKTLELISGLTGL+SLNVSNSR++++GLRHLK
Sbjct: 472 GLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLK 531
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE 299
LKNLRSLTLESCK++ANDI+KL++T LPNL FRPE
Sbjct: 532 PLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 568
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+TDSG++ + L+SL LNL ++TD L ++ LTGL L++ +RIT++G HL+
Sbjct: 401 VTDSGLRKLSGLTSLRTLNLDAR-HVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 459
Query: 406 LKNLRSLTLESCKVTANDIKKLK 338
LK L+SL + +T +K +K
Sbjct: 460 LKKLQSLEICGGGLTDTGVKNIK 482
Score = 56.6 bits (135), Expect = 2e-07
Identities = 33/81 (40%), Positives = 48/81 (58%)
Frame = -2
Query: 583 TDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTL 404
+DSG + DL +L LNL N N+T+ L + GLT L SLN+ + RI + GL HL +
Sbjct: 306 SDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGM 364
Query: 403 KNLRSLTLESCKVTANDIKKL 341
L+SL L +V +N ++ L
Sbjct: 365 LELKSLELSDTEVGSNGLRHL 385
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+T+S + ++K L+ L LNL + + D+ L +SG+ L SL +S++ + + GLRHL
Sbjct: 329 ITNSCLVHLKGLTKLESLNLD-SCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 387
Query: 406 LKNLRSLTLESCKVTANDIKKL 341
L NL S+ L VT + ++KL
Sbjct: 388 LSNLESINLSFTVVTDSGLRKL 409
Score = 49.7 bits (117), Expect = 3e-05
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNV-SNSRITNAGLRHLK 410
+TDSG+ ++K ++L LN + ++++ L +SGL+ L SL+ N+ IT G+R L
Sbjct: 150 ITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITAQGMRALS 209
Query: 409 TLKNLRSLTLESC 371
L NL+ L LE C
Sbjct: 210 NLVNLKKLDLEKC 222
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = -2
Query: 577 SGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKN 398
+G++++ LS+L +NLS +TD L +SGLT L +LN+ +T+AGL L +L
Sbjct: 380 NGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTG 438
Query: 397 LRSLTLESCKVT---ANDIKKLK 338
L L L ++T N ++ LK
Sbjct: 439 LTHLDLFGARITDSGTNHLRNLK 461
Score = 45.1 bits (105), Expect = 7e-04
Identities = 27/63 (42%), Positives = 37/63 (57%)
Frame = -2
Query: 553 LSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKNLRSLTLES 374
L+ L LNL++ N +D E S L L LN+ + ITN+ L HLK L L SL L+S
Sbjct: 292 LAGLMYLNLNR-CNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDS 350
Query: 373 CKV 365
C++
Sbjct: 351 CRI 353
Score = 45.1 bits (105), Expect = 7e-04
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 1/92 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ ++ + L L LS ++ + L +SGL+ L S+N+S + +T++GLR L L
Sbjct: 355 DEGLVHLSGMLELKSLELS-DTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLT 413
Query: 400 NLRSLTLESCKVTANDIKKLKS-TYLPNLACF 308
+LR+L L++ VT + L S T L +L F
Sbjct: 414 SLRTLNLDARHVTDAGLSALTSLTGLTHLDLF 445
Score = 37.7 bits (86), Expect = 0.11
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -2
Query: 589 GLTDSGVKNIKDLS-SLTCLNLSQNSNLTDKTLELISGLTGLISLNVS-NSRITNAGLRH 416
G+ D + I S SL ++ S S++TD L + G T L SLN + +I+N GL H
Sbjct: 124 GVNDDWMDVISSQSTSLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVH 182
Query: 415 LKTLKNLRSLTL-ESCKVTANDIKKLKS 335
L L NL SL+ + +TA ++ L +
Sbjct: 183 LSGLSNLTSLSFRRNAAITAQGMRALSN 210
Score = 36.2 bits (82), Expect = 0.32
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAG-------- 425
D G+ +++ L+ L LN+ + +TD +E +SGL L LN+ R A
Sbjct: 226 DGGLVHLRALTKLESLNIKWCNCITDADMEPLSGLNKLNLLNLEGCRHVTAACLDTLTGL 285
Query: 424 LRHLKTLKNLRSLTLESCKVTANDIKK 344
RH L L L L C + + +K
Sbjct: 286 YRHPHALAGLMYLNLNRCNFSDSGCEK 312
>gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 161 bits (407), Expect = 7e-39
Identities = 81/97 (83%), Positives = 92/97 (94%)
Frame = -2
Query: 589 GLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLK 410
GLTD+GVKNIKDLSSLT LNLSQNSNLTDKTLELISGLTGL+SLNVSNSR++++GLRHLK
Sbjct: 489 GLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLK 548
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE 299
LKNLRSLTLESCK++ANDI+KL++T LPNL FRPE
Sbjct: 549 PLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+TDSG++ + L+SL LNL ++TD L ++ LTGL L++ +RIT++G HL+
Sbjct: 418 VTDSGLRKLSGLTSLRTLNLDAR-HVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Query: 406 LKNLRSLTLESCKVTANDIKKLK 338
LK L+SL + +T +K +K
Sbjct: 477 LKKLQSLEICGGGLTDTGVKNIK 499
Score = 56.6 bits (135), Expect = 2e-07
Identities = 33/81 (40%), Positives = 48/81 (58%)
Frame = -2
Query: 583 TDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTL 404
+DSG + DL +L LNL N N+T+ L + GLT L SLN+ + RI + GL HL +
Sbjct: 323 SDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGM 381
Query: 403 KNLRSLTLESCKVTANDIKKL 341
L+SL L +V +N ++ L
Sbjct: 382 LELKSLELSDTEVGSNGLRHL 402
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+T+S + ++K L+ L LNL + + D+ L +SG+ L SL +S++ + + GLRHL
Sbjct: 346 ITNSCLVHLKGLTKLESLNLD-SCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 404
Query: 406 LKNLRSLTLESCKVTANDIKKL 341
L NL S+ L VT + ++KL
Sbjct: 405 LSNLESINLSFTVVTDSGLRKL 426
Score = 50.1 bits (118), Expect = 2e-05
Identities = 29/75 (38%), Positives = 45/75 (59%), Gaps = 1/75 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ +++ L+ L LN+ + +TD +E +S LT L L + S+IT+ G+ +LK L
Sbjct: 226 DGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRRLQICCSKITDIGISYLKGLN 285
Query: 400 NLRSLTLESCK-VTA 359
L L LE C+ VTA
Sbjct: 286 KLNLLNLEGCRHVTA 300
Score = 49.7 bits (117), Expect = 3e-05
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNV-SNSRITNAGLRHLK 410
+TDSG+ ++K ++L LN + ++++ L +SGL+ L SL+ N+ IT G+R L
Sbjct: 150 ITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITAQGMRALS 209
Query: 409 TLKNLRSLTLESC 371
L NL+ L LE C
Sbjct: 210 NLVNLKKLDLEKC 222
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = -2
Query: 577 SGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKN 398
+G++++ LS+L +NLS +TD L +SGLT L +LN+ +T+AGL L +L
Sbjct: 397 NGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTG 455
Query: 397 LRSLTLESCKVT---ANDIKKLK 338
L L L ++T N ++ LK
Sbjct: 456 LTHLDLFGARITDSGTNHLRNLK 478
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 24/98 (24%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSN------------- 446
+TD G+ +K L+ L LNL ++T L+ ++ L GL+ LN++
Sbjct: 273 ITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSD 332
Query: 445 -----------SRITNAGLRHLKTLKNLRSLTLESCKV 365
+ ITN+ L HLK L L SL L+SC++
Sbjct: 333 LINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRI 370
Score = 45.1 bits (105), Expect = 7e-04
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 1/92 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ ++ + L L LS ++ + L +SGL+ L S+N+S + +T++GLR L L
Sbjct: 372 DEGLVHLSGMLELKSLELS-DTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLT 430
Query: 400 NLRSLTLESCKVTANDIKKLKS-TYLPNLACF 308
+LR+L L++ VT + L S T L +L F
Sbjct: 431 SLRTLNLDARHVTDAGLSALTSLTGLTHLDLF 462
Score = 37.7 bits (86), Expect = 0.11
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -2
Query: 589 GLTDSGVKNIKDLS-SLTCLNLSQNSNLTDKTLELISGLTGLISLNVS-NSRITNAGLRH 416
G+ D + I S SL ++ S S++TD L + G T L SLN + +I+N GL H
Sbjct: 124 GVNDDWMDVISSQSTSLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVH 182
Query: 415 LKTLKNLRSLTL-ESCKVTANDIKKLKS 335
L L NL SL+ + +TA ++ L +
Sbjct: 183 LSGLSNLTSLSFRRNAAITAQGMRALSN 210
Score = 34.3 bits (77), Expect = 1.2
Identities = 30/91 (32%), Positives = 45/91 (48%), Gaps = 1/91 (1%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSR-ITNAGLRHLK 410
+T G++ + +L +L L+L + + D L + LT L SLN+ IT+A + L
Sbjct: 200 ITAQGMRALSNLVNLKKLDLEKCPGI-DGGLVHLRALTKLESLNIKWCNCITDADMEPLS 258
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNL 317
L NLR L + K+T I LK NL
Sbjct: 259 VLTNLRRLQICCSKITDIGISYLKGLNKLNL 289
>gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
Length = 585
Score = 161 bits (407), Expect = 7e-39
Identities = 81/97 (83%), Positives = 92/97 (94%)
Frame = -2
Query: 589 GLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLK 410
GLTD+GVKNIKDLSSLT LNLSQNSNLTDKTLELISGLTGL+SLNVSNSR++++GLRHLK
Sbjct: 489 GLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLK 548
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE 299
LKNLRSLTLESCK++ANDI+KL++T LPNL FRPE
Sbjct: 549 PLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 585
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+TDSG++ + L+SL LNL ++TD L ++ LTGL L++ +RIT++G HL+
Sbjct: 418 VTDSGLRKLSGLTSLRTLNLDAR-HVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 476
Query: 406 LKNLRSLTLESCKVTANDIKKLK 338
LK L+SL + +T +K +K
Sbjct: 477 LKKLQSLEICGGGLTDTGVKNIK 499
Score = 56.6 bits (135), Expect = 2e-07
Identities = 33/81 (40%), Positives = 48/81 (58%)
Frame = -2
Query: 583 TDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTL 404
+DSG + DL +L LNL N N+T+ L + GLT L SLN+ + RI + GL HL +
Sbjct: 323 SDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGM 381
Query: 403 KNLRSLTLESCKVTANDIKKL 341
L+SL L +V +N ++ L
Sbjct: 382 LELKSLELSDTEVGSNGLRHL 402
Score = 52.0 bits (123), Expect = 6e-06
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ +++ L+ L LN+ + +TD +E +S LT L SL + S+IT+ G+ +LK L
Sbjct: 226 DGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQICCSKITDIGISYLKGLN 285
Query: 400 NLRSLTLESCK-VTA 359
L L LE C+ VTA
Sbjct: 286 KLNLLNLEGCRHVTA 300
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+T+S + ++K L+ L LNL + + D+ L +SG+ L SL +S++ + + GLRHL
Sbjct: 346 ITNSCLVHLKGLTKLESLNLD-SCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 404
Query: 406 LKNLRSLTLESCKVTANDIKKL 341
L NL S+ L VT + ++KL
Sbjct: 405 LSNLESINLSFTVVTDSGLRKL 426
Score = 49.7 bits (117), Expect = 3e-05
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNV-SNSRITNAGLRHLK 410
+TDSG+ ++K ++L LN + ++++ L +SGL+ L SL+ N+ IT G+R L
Sbjct: 150 ITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAITAQGMRALS 209
Query: 409 TLKNLRSLTLESC 371
L NL+ L LE C
Sbjct: 210 NLVNLKKLDLEKC 222
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = -2
Query: 577 SGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKN 398
+G++++ LS+L +NLS +TD L +SGLT L +LN+ +T+AGL L +L
Sbjct: 397 NGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTG 455
Query: 397 LRSLTLESCKVT---ANDIKKLK 338
L L L ++T N ++ LK
Sbjct: 456 LTHLDLFGARITDSGTNHLRNLK 478
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 24/98 (24%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSN------------- 446
+TD G+ +K L+ L LNL ++T L+ ++ L GL+ LN++
Sbjct: 273 ITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSD 332
Query: 445 -----------SRITNAGLRHLKTLKNLRSLTLESCKV 365
+ ITN+ L HLK L L SL L+SC++
Sbjct: 333 LINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRI 370
Score = 45.1 bits (105), Expect = 7e-04
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 1/92 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ ++ + L L LS ++ + L +SGL+ L S+N+S + +T++GLR L L
Sbjct: 372 DEGLVHLSGMLELKSLELS-DTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLT 430
Query: 400 NLRSLTLESCKVTANDIKKLKS-TYLPNLACF 308
+LR+L L++ VT + L S T L +L F
Sbjct: 431 SLRTLNLDARHVTDAGLSALTSLTGLTHLDLF 462
Score = 37.7 bits (86), Expect = 0.11
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Frame = -2
Query: 589 GLTDSGVKNIKDLS-SLTCLNLSQNSNLTDKTLELISGLTGLISLNVS-NSRITNAGLRH 416
G+ D + I S SL ++ S S++TD L + G T L SLN + +I+N GL H
Sbjct: 124 GVNDDWMDVISSQSTSLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVH 182
Query: 415 LKTLKNLRSLTL-ESCKVTANDIKKLKS 335
L L NL SL+ + +TA ++ L +
Sbjct: 183 LSGLSNLTSLSFRRNAAITAQGMRALSN 210
Score = 36.2 bits (82), Expect = 0.32
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSR-ITNAGLRHLK 410
+T G++ + +L +L L+L + + D L + LT L SLN+ IT+A + L
Sbjct: 200 ITAQGMRALSNLVNLKKLDLEKCPGI-DGGLVHLRALTKLESLNIKWCNCITDADMEPLS 258
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNL 317
L NLRSL + K+T I LK NL
Sbjct: 259 VLTNLRSLQICCSKITDIGISYLKGLNKLNL 289
>ref|NP_563980.1| expressed protein; protein id: At1g15740.1, supported by cDNA:
gi_14423507, supported by cDNA: gi_20148356 [Arabidopsis
thaliana] gi|14423508|gb|AAK62436.1|AF386991_1 Unknown
protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis
thaliana]
Length = 332
Score = 161 bits (407), Expect = 7e-39
Identities = 81/97 (83%), Positives = 92/97 (94%)
Frame = -2
Query: 589 GLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLK 410
GLTD+GVKNIKDLSSLT LNLSQNSNLTDKTLELISGLTGL+SLNVSNSR++++GLRHLK
Sbjct: 236 GLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLK 295
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE 299
LKNLRSLTLESCK++ANDI+KL++T LPNL FRPE
Sbjct: 296 PLKNLRSLTLESCKLSANDIRKLQATDLPNLVNFRPE 332
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/83 (38%), Positives = 52/83 (62%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+TDSG++ + L+SL LNL ++TD L ++ LTGL L++ +RIT++G HL+
Sbjct: 165 VTDSGLRKLSGLTSLRTLNLDAR-HVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRN 223
Query: 406 LKNLRSLTLESCKVTANDIKKLK 338
LK L+SL + +T +K +K
Sbjct: 224 LKKLQSLEICGGGLTDTGVKNIK 246
Score = 56.6 bits (135), Expect = 2e-07
Identities = 33/81 (40%), Positives = 48/81 (58%)
Frame = -2
Query: 583 TDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTL 404
+DSG + DL +L LNL N N+T+ L + GLT L SLN+ + RI + GL HL +
Sbjct: 70 SDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGM 128
Query: 403 KNLRSLTLESCKVTANDIKKL 341
L+SL L +V +N ++ L
Sbjct: 129 LELKSLELSDTEVGSNGLRHL 149
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/82 (36%), Positives = 50/82 (60%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKT 407
+T+S + ++K L+ L LNL + + D+ L +SG+ L SL +S++ + + GLRHL
Sbjct: 93 ITNSCLVHLKGLTKLESLNLD-SCRIGDEGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 151
Query: 406 LKNLRSLTLESCKVTANDIKKL 341
L NL S+ L VT + ++KL
Sbjct: 152 LSNLESINLSFTVVTDSGLRKL 173
Score = 47.8 bits (112), Expect = 1e-04
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = -2
Query: 577 SGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKN 398
+G++++ LS+L +NLS +TD L +SGLT L +LN+ +T+AGL L +L
Sbjct: 144 NGLRHLSGLSNLESINLSFTV-VTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTG 202
Query: 397 LRSLTLESCKVT---ANDIKKLK 338
L L L ++T N ++ LK
Sbjct: 203 LTHLDLFGARITDSGTNHLRNLK 225
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 24/98 (24%)
Frame = -2
Query: 586 LTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSN------------- 446
+TD G+ +K L+ L LNL ++T L+ ++ L GL+ LN++
Sbjct: 20 ITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSD 79
Query: 445 -----------SRITNAGLRHLKTLKNLRSLTLESCKV 365
+ ITN+ L HLK L L SL L+SC++
Sbjct: 80 LINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRI 117
Score = 45.1 bits (105), Expect = 7e-04
Identities = 32/92 (34%), Positives = 53/92 (56%), Gaps = 1/92 (1%)
Frame = -2
Query: 580 DSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLK 401
D G+ ++ + L L LS ++ + L +SGL+ L S+N+S + +T++GLR L L
Sbjct: 119 DEGLVHLSGMLELKSLELS-DTEVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLT 177
Query: 400 NLRSLTLESCKVTANDIKKLKS-TYLPNLACF 308
+LR+L L++ VT + L S T L +L F
Sbjct: 178 SLRTLNLDARHVTDAGLSALTSLTGLTHLDLF 209
>gb|AAN62335.1|AF506028_2 CTV.1 [Poncirus trifoliata]
Length = 205
Score = 97.1 bits (240), Expect = 2e-19
Identities = 58/91 (63%), Positives = 63/91 (68%)
Frame = -2
Query: 589 GLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLK 410
GLTD+GVK+IKDLSSL LNLSQN NLTDKTLE VSNSRIT+AGLRH
Sbjct: 125 GLTDAGVKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH-- 171
Query: 409 TLKNLRSLTLESCKVTANDIKKLKSTYLPNL 317
LESCKVTANDIK+L+S LPNL
Sbjct: 172 --------PLESCKVTANDIKRLQSRDLPNL 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,047,082
Number of Sequences: 1393205
Number of extensions: 9525080
Number of successful extensions: 26200
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 25030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26122
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
