Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004193A_C01 KMC004193A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06270.1| contains ESTs AU057282(S21302),AU057281(S21302)~... 40 0.010
ref|NP_191537.1| putative protein; protein id: At3g59780.1 [Arab... 40 0.010
ref|NP_650191.1| CG5196-PA [Drosophila melanogaster] gi|7299620|... 33 1.6
gb|AAM11332.1| GH06759p [Drosophila melanogaster] 33 1.6
gb|EAA16649.1| Patatin, putative [Plasmodium yoelii yoelii] 31 6.1
>dbj|BAC06270.1| contains ESTs AU057282(S21302),AU057281(S21302)~similar to
Arabidopsis thaliana chromosome 3, At3g59780~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|22093589|dbj|BAC06885.1| P0674H09.7 [Oryza sativa
(japonica cultivar-group)]
Length = 594
Score = 40.4 bits (93), Expect = 0.010
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -1
Query: 481 SSLDVQNRVLQAAAKHESQPSDSEGN 404
S+ VQ+RVLQAAAKHESQPSD+E +
Sbjct: 563 STTAVQDRVLQAAAKHESQPSDAEAD 588
>ref|NP_191537.1| putative protein; protein id: At3g59780.1 [Arabidopsis thaliana]
gi|11281192|pir||T47802 hypothetical protein F24G16.50 -
Arabidopsis thaliana gi|7019672|emb|CAB75797.1| putative
protein [Arabidopsis thaliana]
Length = 663
Score = 40.4 bits (93), Expect = 0.010
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = -1
Query: 481 SSLDVQNRVLQAAAKHESQPSD--SEGNQDPVPDQTVPLN 368
SS DV++RVLQAAAKHES+PSD SE QD LN
Sbjct: 617 SSSDVRSRVLQAAAKHESKPSDETSESLQDASSSPEEALN 656
>ref|NP_650191.1| CG5196-PA [Drosophila melanogaster] gi|7299620|gb|AAF54805.1|
CG5196-PA [Drosophila melanogaster]
Length = 427
Score = 33.1 bits (74), Expect = 1.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 393 TGSWLPSLSDGWDSCLAAACN 455
TG WLP S GW C+AA C+
Sbjct: 307 TGRWLPIFSQGWRVCVAAPCS 327
>gb|AAM11332.1| GH06759p [Drosophila melanogaster]
Length = 395
Score = 33.1 bits (74), Expect = 1.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 393 TGSWLPSLSDGWDSCLAAACN 455
TG WLP S GW C+AA C+
Sbjct: 275 TGRWLPIFSQGWRVCVAAPCS 295
>gb|EAA16649.1| Patatin, putative [Plasmodium yoelii yoelii]
Length = 1852
Score = 31.2 bits (69), Expect = 6.1
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +3
Query: 99 NNLFNN*IQILLSTGGNKKN*NRIYLLNFYFSPYISKSLRAGQSQIWGKG*ITINLQTLS 278
N L NN L+ GGNKKN N N YI K ++ ++ I + ++
Sbjct: 150 NGLINN---CLVEKGGNKKNENEQDRNNMLIQNYIYKIIKKSRNYISTENEYICIRNYMN 206
Query: 279 H*DNML*PHLSLFYFS 326
H DN++ P YFS
Sbjct: 207 HFDNLMFP----IYFS 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,328,125
Number of Sequences: 1393205
Number of extensions: 7754115
Number of successful extensions: 18468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18466
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
