Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004192A_C01 KMC004192A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_813446.1| Type I restriction enzyme EcoR124II R protein [... 33 1.5
ref|NP_598537.1| RIKEN cDNA 5031409J19 [Mus musculus] gi|1751253... 32 4.4
dbj|BAC25606.1| unnamed protein product [Mus musculus] 32 4.4
ref|NP_626219.1| putative iron sulphur binding protein [Streptom... 32 5.7
gb|AAF69219.1|AF147049_1 cytochrome c oxidase subunit 1 [Leptomy... 31 9.8
>ref|NP_813446.1| Type I restriction enzyme EcoR124II R protein [Bacteroides
thetaiotaomicron VPI-5482] gi|29341854|gb|AAO79640.1|
Type I restriction enzyme EcoR124II R protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 942
Score = 33.5 bits (75), Expect = 1.5
Identities = 17/39 (43%), Positives = 22/39 (55%)
Frame = +2
Query: 11 IQIFMISYPRNLKYIQLRWIIPYNFTFNYTDSENRACNE 127
IQ+F+IS N +Y Y FTFN+TD+ N NE
Sbjct: 171 IQLFVISNGVNTRYFANNPNSGYKFTFNWTDAANHPFNE 209
>ref|NP_598537.1| RIKEN cDNA 5031409J19 [Mus musculus] gi|17512539|gb|AAH19217.1|
Unknown (protein for MGC:29266) [Mus musculus]
Length = 908
Score = 32.0 bits (71), Expect = 4.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 241 LCR----SNFSFLSYPF--TAFPRAIKWIQFVSLLFQIADVINCFIASSI 110
LCR ++FS L PF ++ +KWI ++ L IA +I C I S+
Sbjct: 558 LCRCSHLTSFSMLMSPFVPSSVVPVVKWITYIGLSISIASLILCLIIESL 607
>dbj|BAC25606.1| unnamed protein product [Mus musculus]
Length = 635
Score = 32.0 bits (71), Expect = 4.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 241 LCR----SNFSFLSYPF--TAFPRAIKWIQFVSLLFQIADVINCFIASSI 110
LCR ++FS L PF ++ +KWI ++ L IA +I C I S+
Sbjct: 558 LCRCSHLTSFSMLMSPFVPSSVVPVVKWITYIGLSISIASLILCLIIESL 607
>ref|NP_626219.1| putative iron sulphur binding protein [Streptomyces coelicolor
A3(2)] gi|7480895|pir||T36028 probable iron sulfur
binding protein - Streptomyces coelicolor
gi|4468691|emb|CAB38145.1| putative iron sulphur binding
protein [Streptomyces coelicolor A3(2)]
Length = 141
Score = 31.6 bits (70), Expect = 5.7
Identities = 15/47 (31%), Positives = 24/47 (50%)
Frame = +2
Query: 260 SLTTSKAEERSMKKLQAKLI*TNCHHHQLERSKL*CSCHWLDFDEPT 400
++ S+A + S+K C +LE +KL C+CH +FD T
Sbjct: 65 NVVVSRAADGSLKAFSTVCTHAGCPIRKLEGTKLVCNCHGSEFDART 111
>gb|AAF69219.1|AF147049_1 cytochrome c oxidase subunit 1 [Leptomyrmex unicolor]
Length = 69
Score = 30.8 bits (68), Expect = 9.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 308 LAIFSLTFLLLCLWSKKEQKRKIV*VKFFISLLSFHSF 195
++I SL L+ +W KRKI+ + F S + +H+F
Sbjct: 18 ISIISLIMLIFIIWESWSSKRKIISMFFLNSSMEWHNF 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,915,751
Number of Sequences: 1393205
Number of extensions: 7753111
Number of successful extensions: 18231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18222
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
