Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004191A_C01 KMC004191A_c01
(366 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02669.1| gene_id:MSL1.7~unknown protein [Arabidopsis thal... 61 4e-09
ref|NP_563969.1| expressed protein; protein id: At1g15270.1, sup... 61 4e-09
ref|NP_566533.1| expressed protein; protein id: At3g16040.1, sup... 61 4e-09
gb|AAM63755.1| unknown [Arabidopsis thaliana] 58 3e-08
ref|NP_652500.1| CG13364-PA [Drosophila melanogaster] gi|7511888... 42 0.003
>dbj|BAB02669.1| gene_id:MSL1.7~unknown protein [Arabidopsis thaliana]
Length = 62
Score = 60.8 bits (146), Expect = 4e-09
Identities = 29/32 (90%), Positives = 32/32 (99%)
Frame = -2
Query: 365 KKEEEKALKELKAQASQKGSFGGSGLKKSGKK 270
KK+EEKALKEL+A+ASQKGSFGGSGLKKSGKK
Sbjct: 31 KKDEEKALKELRAKASQKGSFGGSGLKKSGKK 62
>ref|NP_563969.1| expressed protein; protein id: At1g15270.1, supported by cDNA:
22166., supported by cDNA: gi_12484214, supported by
cDNA: gi_15028106, supported by cDNA: gi_17065255,
supported by cDNA: gi_20260077 [Arabidopsis thaliana]
gi|25518748|pir||H86286 hypothetical protein F9L1.21
[imported] - Arabidopsis thaliana
gi|5103825|gb|AAD39655.1|AC007591_20 ESTs gb|AA650895,
gb|AA720043 and gb|R29777 come from this gene.
[Arabidopsis thaliana]
gi|12484215|gb|AAG54006.1|AF336925_1 unknown protein
[Arabidopsis thaliana] gi|15028107|gb|AAK76677.1|
unknown protein [Arabidopsis thaliana]
gi|17065256|gb|AAL32782.1| Unknown protein [Arabidopsis
thaliana] gi|20260078|gb|AAM13386.1| unknown protein
[Arabidopsis thaliana] gi|21592316|gb|AAM64267.1|
unknown [Arabidopsis thaliana]
Length = 64
Score = 60.8 bits (146), Expect = 4e-09
Identities = 29/32 (90%), Positives = 32/32 (99%)
Frame = -2
Query: 365 KKEEEKALKELKAQASQKGSFGGSGLKKSGKK 270
KK+EEKALKEL+A+ASQKGSFGGSGLKKSGKK
Sbjct: 33 KKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64
>ref|NP_566533.1| expressed protein; protein id: At3g16040.1, supported by cDNA:
268920. [Arabidopsis thaliana]
Length = 64
Score = 60.8 bits (146), Expect = 4e-09
Identities = 29/32 (90%), Positives = 32/32 (99%)
Frame = -2
Query: 365 KKEEEKALKELKAQASQKGSFGGSGLKKSGKK 270
KK+EEKALKEL+A+ASQKGSFGGSGLKKSGKK
Sbjct: 33 KKDEEKALKELRAKASQKGSFGGSGLKKSGKK 64
>gb|AAM63755.1| unknown [Arabidopsis thaliana]
Length = 64
Score = 58.2 bits (139), Expect = 3e-08
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -2
Query: 365 KKEEEKALKELKAQASQKGSFGGSGLKKSGKK 270
KK+EEKALK L+A+ASQKGSFGGSGLKKSGKK
Sbjct: 33 KKDEEKALKVLRAKASQKGSFGGSGLKKSGKK 64
>ref|NP_652500.1| CG13364-PA [Drosophila melanogaster] gi|7511888|pir||T13381
hypothetical protein 115C2.12 - fruit fly (Drosophila
melanogaster) gi|4688661|emb|CAB41345.1|
/prediction=(method:''genefinder'', version:''084'',
score:''18.93'')~/prediction=(method:''genscan'',
version:''1.0'',
score:''25.85'')~/match=(desc:''F49C12.11 PROTEIN'',
species:''CAENORHABDITIS ELEGANS'',
ranges:(query:3059..3250, target:SPTREMBL::Q20588:64..1,
score:''213.00'')), method:''blastx'',
version:''1.4.9'')~/match=(desc:''LP11709.5prime LP
Drosophila melanogaster larval-early pupal pOT2
Drosophila melanogaster cDNA clone LP11709 5prime, mRNA
sequence'', species:''Drosophila melanogaster (fr>
gi|7290062|gb|AAF45528.1| CG13364-PA [Drosophila
melanogaster]
Length = 64
Score = 41.6 bits (96), Expect = 0.003
Identities = 19/32 (59%), Positives = 25/32 (77%)
Frame = -2
Query: 365 KKEEEKALKELKAQASQKGSFGGSGLKKSGKK 270
+KE++KAL+ KA AS+KG G G+KKSGKK
Sbjct: 33 QKEQQKALEAAKANASKKGPLVGGGIKKSGKK 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,621,069
Number of Sequences: 1393205
Number of extensions: 4535003
Number of successful extensions: 10741
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10738
length of database: 448,689,247
effective HSP length: 97
effective length of database: 313,548,362
effective search space used: 7525160688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
