Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004189A_C01 KMC004189A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200347.1| wax synthase-like protein; protein id: At5g5536... 33 1.1
ref|NP_702680.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.1
ref|NP_813312.1| hypothetical protein [Bacteroides thetaiotaomic... 31 4.1
ref|NP_046843.1| minor tail subunit; gp27 [Mycobacteriophage D29... 30 6.9
ref|NP_595985.1| putative component of ER protein-translocation ... 30 9.0
>ref|NP_200347.1| wax synthase-like protein; protein id: At5g55360.1 [Arabidopsis
thaliana] gi|9758168|dbj|BAB08553.1| wax synthase-like
protein [Arabidopsis thaliana]
Length = 342
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/43 (48%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +3
Query: 93 FLAWLASLKVKESVILFSFSVGSFSPL-YL*HRFFFIHPFPVK 218
FL+WLA+ K+ ILFSF G SPL RF I FP+K
Sbjct: 65 FLSWLANFKL----ILFSFDQGPLSPLPRTLSRFICITCFPIK 103
>ref|NP_702680.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498146|emb|CAD49115.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 254
Score = 31.2 bits (69), Expect = 3.1
Identities = 13/47 (27%), Positives = 26/47 (54%)
Frame = +2
Query: 125 RECYSFFFFCGLFLPFIFVTQIFFYSPLSSEKFLES*RDIQKGTKIK 265
R C+SF+F+ LF+ ++F+ Y+ +K L D ++ ++K
Sbjct: 10 RFCFSFYFYVQLFIIYLFIWTENKYNEYGGDKNLNGKLDFKRSQRLK 56
>ref|NP_813312.1| hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29341720|gb|AAO79506.1| hypothetical protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 85
Score = 30.8 bits (68), Expect = 4.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 136 FFFLFLWALSPLYICDTDFFLF 201
FFFL++++L PL+I D FFLF
Sbjct: 27 FFFLWVFSLIPLFIVDLLFFLF 48
>ref|NP_046843.1| minor tail subunit; gp27 [Mycobacteriophage D29]
gi|6136205|sp|O64221|VG27_BPMD2 MINOR TAIL PROTEIN GP27
gi|7460360|pir||A72803 minor tail subunit protein -
Mycobacterium phage D29 gi|3172275|gb|AAC18468.1| minor
tail subunit; gp27 [Mycobacteriophage D29]
Length = 336
Score = 30.0 bits (66), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 296 KERVNLTPG*FYRVPR*LVPGNRERVPFSQTFFNPGWQIGW 418
+E+ L P Y P+ VPG+ E++P F PG +I W
Sbjct: 191 REQGGLNPTDQYIAPKWTVPGSTEKIPDFPWPFPPGVEIPW 231
>ref|NP_595985.1| putative component of ER protein-translocation subcomplex; DNA J
protein [Schizosaccharomyces pombe]
gi|9967698|emb|CAC05724.1| putative component of ER
protein-translocation subcomplex; DNA J protein
[Schizosaccharomyces pombe]
Length = 611
Score = 29.6 bits (65), Expect = 9.0
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Frame = +1
Query: 223 SRELTRHTKGNKN*----IKHPFSHLQKKRKGKFNTRLILQGSPVI 348
S+ELT KN +K F HL +K+ FNT IL S V+
Sbjct: 254 SKELTSLVPNEKNPKEYILKLLFDHLNRKKTNNFNTHQILSQSDVV 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,487,463
Number of Sequences: 1393205
Number of extensions: 8796058
Number of successful extensions: 19036
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19011
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
