Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004185A_C01 KMC004185A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175919.1| unknown protein; protein id: At1g55230.1 [Arabi... 37 0.18
gb|AAH44969.1| Similar to nucleolar cysteine-rich protein [Xenop... 33 2.0
ref|NP_175920.1| unknown protein; protein id: At1g55240.1 [Arabi... 33 2.6
gb|AAA97416.1| ORF1 32 7.5
ref|NP_043564.1| minor structural protein [Lactococcus phage c2]... 32 7.5
>ref|NP_175919.1| unknown protein; protein id: At1g55230.1 [Arabidopsis thaliana]
gi|25405805|pir||B96594 unknown protein, 75526-74624
[imported] - Arabidopsis thaliana
gi|12323182|gb|AAG51578.1|AC027034_24 unknown protein;
75526-74624 [Arabidopsis thaliana]
Length = 300
Score = 37.0 bits (84), Expect = 0.18
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -2
Query: 578 FIILVTIFSVSLYLVMDKFYGGGKXEYFSLGNEEEGGEEGDD-VDVESQKRS 426
F + +TIF +SL+L++ Y G EY L +++G E G++ D+ES K+S
Sbjct: 245 FFVGITIFVMSLFLILSGLY-GENAEYSILVTKDKGEESGEEKQDIESLKKS 295
>gb|AAH44969.1| Similar to nucleolar cysteine-rich protein [Xenopus laevis]
Length = 313
Score = 33.5 bits (75), Expect = 2.0
Identities = 15/47 (31%), Positives = 25/47 (52%)
Frame = -2
Query: 518 GGGKXEYFSLGNEEEGGEEGDDVDVESQKRSIVGNPMSFIHVGKTFS 378
GG +Y +EEE EE D+ + E + P S +H+G+T++
Sbjct: 260 GGNNDDY----DEEEDDEEADEEEYEEDSDTEASKPFSHLHLGRTYA 302
>ref|NP_175920.1| unknown protein; protein id: At1g55240.1 [Arabidopsis thaliana]
gi|25405807|pir||C96594 unknown protein, 73214-72236
[imported] - Arabidopsis thaliana
gi|12323179|gb|AAG51575.1|AC027034_21 unknown protein;
73214-72236 [Arabidopsis thaliana]
Length = 247
Score = 33.1 bits (74), Expect = 2.6
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 563 TIFSVSLYLVMDKFYGGGKXEYFSLGNEEEGGEEGDDVDVESQKRSIVGNPMSFIHVGK 387
T+F V+LYL++D+ Y G EY SL + ++ ++ ES+ SF+ +GK
Sbjct: 186 TLFVVTLYLILDRVY-GENVEYSSLTTNNQTYQDDEEQHFESKST----QKTSFVQMGK 239
>gb|AAA97416.1| ORF1
Length = 399
Score = 31.6 bits (70), Expect = 7.5
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = -2
Query: 515 GGKXEYFSLGNEEEGGEEGDDVDVESQKRSIVGNPMSFIHVGKTFS 378
G + F G E G + E+++ I+GN +SF+ GKT++
Sbjct: 75 GASGDIFDYGTYESGYYNFKCPNTENEEDYIIGNQLSFLQAGKTYT 120
>ref|NP_043564.1| minor structural protein [Lactococcus phage c2]
gi|1146314|gb|AAA92195.1| minor structural protein
Length = 415
Score = 31.6 bits (70), Expect = 7.5
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = -2
Query: 515 GGKXEYFSLGNEEEGGEEGDDVDVESQKRSIVGNPMSFIHVGKTFS 378
G + F G E G + E+++ I+GN +SF+ GKT++
Sbjct: 91 GASGDIFDYGTYESGYYNFKCPNTENEEDYIIGNQLSFLQAGKTYT 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,656,504
Number of Sequences: 1393205
Number of extensions: 11054172
Number of successful extensions: 44639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 42313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44530
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
