Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004183A_C01 KMC004183A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha su... 211 4e-54
dbj|BAB55500.1| putative mitochondrial processing peptidase alph... 207 5e-53
pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) al... 204 4e-52
dbj|BAB62405.1| mitochondrial processing peptidase alpha subunit... 195 4e-49
gb|AAK59675.1| putative mitochondrial processing peptidase alpha... 191 7e-48
>sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha subunit, mitochondrial
precursor (Alpha-MPP) (Ubiquinol-cytochrome C reductase
subunit II) gi|421956|pir||S23558 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) alpha chain precursor - potato
gi|21493|emb|CAA46990.1| mitochondrial processing
peptidase [Solanum tuberosum]
Length = 504
Score = 211 bits (538), Expect = 4e-54
Identities = 110/155 (70%), Positives = 125/155 (79%)
Frame = +1
Query: 91 SRLRARSLNRLPATTRFASSSTVATKQSSSGFGGLFGWLTGERSTSSTPLDFPLPGVTLP 270
S L+AR NR+ TRF+SS+ VATK S GGLF W+TG+ S+S TPLDFPL V L
Sbjct: 10 SSLKARQGNRV--LTRFSSSAAVATKPS----GGLFSWITGDTSSSVTPLDFPLNDVKLS 63
Query: 271 PPLPDHVTPAKTIVTTLPNGVKVASETSATPAASIGIYVDCGSIYETPGTFGATHLLERM 450
PPLPD+V PAKT +TTL NG+KVASE S PAASIG+YVDCGSIYETP ++GATHLLERM
Sbjct: 64 PPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERM 123
Query: 451 AFKSTLNRSHFRVVREVEAIGGNVQASASREQMGY 555
AFKSTLNRSH R+VRE+EAIGGNV ASASRE M Y
Sbjct: 124 AFKSTLNRSHLRIVREIEAIGGNVTASASREHMIY 158
>dbj|BAB55500.1| putative mitochondrial processing peptidase alpha subuunit,
mitochondrial recursor(ALPHA-MPP) [Oryza sativa
(japonica cultivar-group)]
Length = 884
Score = 207 bits (528), Expect = 5e-53
Identities = 104/141 (73%), Positives = 119/141 (83%)
Frame = +1
Query: 133 TRFASSSTVATKQSSSGFGGLFGWLTGERSTSSTPLDFPLPGVTLPPPLPDHVTPAKTIV 312
+RFAS+S V KQSS GGLF WL GE+S+ PLD PLPG+TLPPPLPD V P+KT V
Sbjct: 70 SRFASTSVV--KQSS---GGLFSWLLGEKSSQLPPLDVPLPGITLPPPLPDFVEPSKTKV 124
Query: 313 TTLPNGVKVASETSATPAASIGIYVDCGSIYETPGTFGATHLLERMAFKSTLNRSHFRVV 492
TTLPNG+K+ASETS +PAAS+G+Y+DCGSIYETP + GA+HLLERMAFKST NRSH R+V
Sbjct: 125 TTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNRSHLRLV 184
Query: 493 REVEAIGGNVQASASREQMGY 555
REVEAIGGNV ASASREQM Y
Sbjct: 185 REVEAIGGNVSASASREQMCY 205
>pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) alpha-II chain
precursor - potato gi|587562|emb|CAA56520.1|
mitochondrial processing peptidase [Solanum tuberosum]
Length = 504
Score = 204 bits (520), Expect = 4e-52
Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 3/164 (1%)
Frame = +1
Query: 73 MNRIVTSRLRA---RSLNRLPATTRFASSSTVATKQSSSGFGGLFGWLTGERSTSSTPLD 243
M R +SRLRA R NR+ A RF S+ VATK S GGLF WLTG S S PLD
Sbjct: 1 MYRATSSRLRALKVRGTNRVLA--RFLCSTAVATKPS----GGLFSWLTGGGSDSLPPLD 54
Query: 244 FPLPGVTLPPPLPDHVTPAKTIVTTLPNGVKVASETSATPAASIGIYVDCGSIYETPGTF 423
FPL + LPPPLPD+V P KT +TTL NG+K+ASE SA+PAASIG+YVDCGSIYE P ++
Sbjct: 55 FPLKDIQLPPPLPDYVEPGKTKITTLTNGLKIASEISASPAASIGLYVDCGSIYEAPASY 114
Query: 424 GATHLLERMAFKSTLNRSHFRVVREVEAIGGNVQASASREQMGY 555
GATHLLERMAFKSTLNRSH R+VREVEAIGGNV A+ASRE + Y
Sbjct: 115 GATHLLERMAFKSTLNRSHLRIVREVEAIGGNVTAAASREHLIY 158
>dbj|BAB62405.1| mitochondrial processing peptidase alpha subunit [Morus alba]
Length = 506
Score = 195 bits (495), Expect = 4e-49
Identities = 105/163 (64%), Positives = 118/163 (71%), Gaps = 2/163 (1%)
Frame = +1
Query: 73 MNRIVTSRLRARSLNRLPATTRFASSSTVATKQSSSGFGGLFGWLTGERSTSST--PLDF 246
M R SRLRA RF SS+ VAT GG WL+G SS+ L
Sbjct: 1 MYRATASRLRALKARNFKLGNRFLSSAAVATS------GGNISWLSGGGGYSSSLPSLMI 54
Query: 247 PLPGVTLPPPLPDHVTPAKTIVTTLPNGVKVASETSATPAASIGIYVDCGSIYETPGTFG 426
PL V LPPPLPDHV PAKT +TTL NG+K+AS+TS TPAASIG+YVDCGSIYETP +FG
Sbjct: 55 PLADVKLPPPLPDHVEPAKTKITTLANGLKIASQTSVTPAASIGLYVDCGSIYETPVSFG 114
Query: 427 ATHLLERMAFKSTLNRSHFRVVREVEAIGGNVQASASREQMGY 555
A+HLLERMAFK+T NRSH RVVRE+EAIGG+VQASASREQMGY
Sbjct: 115 ASHLLERMAFKTTRNRSHLRVVREIEAIGGHVQASASREQMGY 157
>gb|AAK59675.1| putative mitochondrial processing peptidase alpha subunit
[Arabidopsis thaliana]
Length = 499
Score = 191 bits (484), Expect = 7e-48
Identities = 103/163 (63%), Positives = 118/163 (72%), Gaps = 2/163 (1%)
Frame = +1
Query: 73 MNRIVTSRLRARS--LNRLPATTRFASSSTVATKQSSSGFGGLFGWLTGERSTSSTPLDF 246
M R SR +A LN +R+ASSS VAT SSS WL+G S+S ++
Sbjct: 1 MYRTAASRAKALKGILNHNFRASRYASSSAVATSSSSSS------WLSGGYSSSLPSMNI 54
Query: 247 PLPGVTLPPPLPDHVTPAKTIVTTLPNGVKVASETSATPAASIGIYVDCGSIYETPGTFG 426
PL GV+LPPPL DHV P+K TTLPNG+ +A+E S PAASIG+YVDCGSIYETP G
Sbjct: 55 PLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRG 114
Query: 427 ATHLLERMAFKSTLNRSHFRVVREVEAIGGNVQASASREQMGY 555
ATHLLERMAFKSTLNRSHFR+VRE+EAIGGN ASASREQMGY
Sbjct: 115 ATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGY 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,755,170
Number of Sequences: 1393205
Number of extensions: 13185960
Number of successful extensions: 74686
Number of sequences better than 10.0: 312
Number of HSP's better than 10.0 without gapping: 52247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67186
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
