Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004179A_C01 KMC004179A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B85429 beta-galactosidase like protein [imported] - Arabido... 92 6e-18
ref|NP_568001.1| glycosyl hydrolase family 35 (beta-galactosidas... 92 6e-18
gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersic... 91 2e-17
pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200... 87 3e-16
gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera] 85 8e-16
>pir||B85429 beta-galactosidase like protein [imported] - Arabidopsis thaliana
gi|4006924|emb|CAB16852.1| beta-galactosidase like
protein [Arabidopsis thaliana]
gi|7270584|emb|CAB80302.1| beta-galactosidase like
protein [Arabidopsis thaliana]
Length = 853
Score = 92.0 bits (227), Expect = 6e-18
Identities = 39/51 (76%), Positives = 45/51 (87%)
Frame = -1
Query: 674 GTCHSPASYAILEKKCIGKRRCIVTVTNSNFGHDPCPNVLKRLSVEAVCAP 522
G CH+ SYAILE+KC+GK RC VT++NSNFG DPCPNVLKRL+VEAVCAP
Sbjct: 794 GECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCAP 844
>ref|NP_568001.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At4g36360.1, supported by cDNA: gi_15810492, supported
by cDNA: gi_20259270 [Arabidopsis thaliana]
gi|6686878|emb|CAB64739.1| putative beta-galactosidase
[Arabidopsis thaliana] gi|15810493|gb|AAL07134.1|
putative beta-galactosidase [Arabidopsis thaliana]
gi|20259271|gb|AAM14371.1| putative beta-galactosidase
[Arabidopsis thaliana]
Length = 856
Score = 92.0 bits (227), Expect = 6e-18
Identities = 39/51 (76%), Positives = 45/51 (87%)
Frame = -1
Query: 674 GTCHSPASYAILEKKCIGKRRCIVTVTNSNFGHDPCPNVLKRLSVEAVCAP 522
G CH+ SYAILE+KC+GK RC VT++NSNFG DPCPNVLKRL+VEAVCAP
Sbjct: 797 GECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCAP 847
>gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersicon esculentum]
Length = 845
Score = 90.5 bits (223), Expect = 2e-17
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = -1
Query: 674 GTCHSPASYAILEKKCIGKRRCIVTVTNSNFGHDPCPNVLKRLSVEAVCAPT 519
GTCH+P S+A++EKKC+G++ C VT++NSNFG DPCPNVLKRLSVEA C PT
Sbjct: 792 GTCHAPDSHAVVEKKCLGRQTCAVTISNSNFGEDPCPNVLKRLSVEAHCTPT 843
>pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200 - Arabidopsis
thaliana gi|2961390|emb|CAA18137.1| beta-galactosidase
like protein [Arabidopsis thaliana]
Length = 853
Score = 86.7 bits (213), Expect = 3e-16
Identities = 39/54 (72%), Positives = 45/54 (83%), Gaps = 3/54 (5%)
Frame = -1
Query: 674 GTCHSPASYAILEK---KCIGKRRCIVTVTNSNFGHDPCPNVLKRLSVEAVCAP 522
G CH+ SYAILE+ KC+GK RC VT++NSNFG DPCPNVLKRL+VEAVCAP
Sbjct: 791 GECHAATSYAILERYMQKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCAP 844
>gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera]
Length = 854
Score = 85.1 bits (209), Expect = 8e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = -1
Query: 674 GTCHSPASYAILEKKCIGKRRCIVTVTNSNFGHDPCPNVLKRLSVEAVCAPT 519
GTCH+P S AILEK CIG+ +C V ++NS FG DPCPNVLKRLSVEA C+PT
Sbjct: 793 GTCHAPNSQAILEKNCIGQEKCSVPISNSYFGADPCPNVLKRLSVEAACSPT 844
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,753,191
Number of Sequences: 1393205
Number of extensions: 11680643
Number of successful extensions: 23964
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 23108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23888
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
