Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004173A_C01 KMC004173A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67371.1| unknown [Arabidopsis thaliana] 105 7e-22
ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); ... 105 7e-22
dbj|BAC22390.1| putative fasciclin-like arabinogalactan-protein ... 75 8e-13
gb|AAG24276.1|AF195889_1 fasciclin-like arabinogalactan protein ... 70 3e-11
gb|AAM66074.1| endosperm-specific protein-like protein [Arabidop... 70 3e-11
>gb|AAM67371.1| unknown [Arabidopsis thaliana]
Length = 193
Score = 105 bits (261), Expect = 7e-22
Identities = 65/108 (60%), Positives = 75/108 (69%), Gaps = 10/108 (9%)
Frame = -1
Query: 649 TLIDEQPLAIFAIDKVLLPKELFKAA--EAPSPAPAPEP-SAADAPKAAK-KKKKPKTKA 482
TLIDEQPLAI+A DKVLLPKELFKA+ EAP+PAPAPE AD+PKAAK K K K KA
Sbjct: 76 TLIDEQPLAIYATDKVLLPKELFKASAVEAPAPAPAPEDGDVADSPKAAKGKAKGKKKKA 135
Query: 481 ADAPADD---SSDAPADSPDDAADQTADDSNGAVRFDGG---GVVMGL 356
A +P +D SD+PA+ PD AD D GAVR GG G+V+ L
Sbjct: 136 APSPDNDPFGDSDSPAEGPDGEADDATADDAGAVRIIGGAKAGLVVSL 183
>ref|NP_200384.1| fasciclin-like arabinogalactan-protein (FLA1); protein id:
At5g55730.1, supported by cDNA: gi_13377775 [Arabidopsis
thaliana] gi|9758607|dbj|BAB09240.1|
gene_id:MDF20.17~pir||T06631~similar to unknown protein
[Arabidopsis thaliana]
gi|13377776|gb|AAK20857.1|AF333970_1 fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|27311863|gb|AAO00897.1| putative protein [Arabidopsis
thaliana]
Length = 424
Score = 105 bits (261), Expect = 7e-22
Identities = 65/108 (60%), Positives = 75/108 (69%), Gaps = 10/108 (9%)
Frame = -1
Query: 649 TLIDEQPLAIFAIDKVLLPKELFKAA--EAPSPAPAPEP-SAADAPKAAK-KKKKPKTKA 482
TLIDEQPLAI+A DKVLLPKELFKA+ EAP+PAPAPE AD+PKAAK K K K KA
Sbjct: 307 TLIDEQPLAIYATDKVLLPKELFKASAVEAPAPAPAPEDGDVADSPKAAKGKAKGKKKKA 366
Query: 481 ADAPADD---SSDAPADSPDDAADQTADDSNGAVRFDGG---GVVMGL 356
A +P +D SD+PA+ PD AD D GAVR GG G+V+ L
Sbjct: 367 APSPDNDPFGDSDSPAEGPDGEADDATADDAGAVRIIGGAKAGLVVSL 414
>dbj|BAC22390.1| putative fasciclin-like arabinogalactan-protein [Oryza sativa
(japonica cultivar-group)]
Length = 459
Score = 75.1 bits (183), Expect = 8e-13
Identities = 48/88 (54%), Positives = 54/88 (60%), Gaps = 2/88 (2%)
Frame = -1
Query: 649 TLIDEQPLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPK-TKAADA 473
T+ D PLA++AI K L PKELFK E +PAPAPE PK KKKKP T AA A
Sbjct: 357 TVKDADPLAVYAISKFLQPKELFKVTEDLAPAPAPE-----GPKKKTKKKKPSTTSAAAA 411
Query: 472 PADDSSDAPADSPDDA-ADQTADDSNGA 392
P+DDSS ADSPD AD AD + A
Sbjct: 412 PSDDSS--AADSPDGTPADDVADKAAAA 437
>gb|AAG24276.1|AF195889_1 fasciclin-like arabinogalactan protein FLA8 [Arabidopsis thaliana]
Length = 323
Score = 69.7 bits (169), Expect = 3e-11
Identities = 37/89 (41%), Positives = 52/89 (57%), Gaps = 2/89 (2%)
Frame = -1
Query: 649 TLIDEQPLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAP 470
T++D P+ IF +D VLLP ELF +++PSPAPAPEP A P A P AA P
Sbjct: 213 TVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPA---DAPSPTAASPP 269
Query: 469 ADDSSDAPADSPDDAADQTAD--DSNGAV 389
A + ++P +P D+ +A+ +N AV
Sbjct: 270 APPTDESPESAPSDSPTGSANSKSANAAV 298
>gb|AAM66074.1| endosperm-specific protein-like protein [Arabidopsis thaliana]
Length = 420
Score = 69.7 bits (169), Expect = 3e-11
Identities = 37/89 (41%), Positives = 52/89 (57%), Gaps = 2/89 (2%)
Frame = -1
Query: 649 TLIDEQPLAIFAIDKVLLPKELFKAAEAPSPAPAPEPSAADAPKAAKKKKKPKTKAADAP 470
T++D P+ IF +D VLLP ELF +++PSPAPAPEP A P A P AA P
Sbjct: 310 TVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPA---DAPSPTAASPP 366
Query: 469 ADDSSDAPADSPDDAADQTAD--DSNGAV 389
A + ++P +P D+ +A+ +N AV
Sbjct: 367 APPTDESPESAPSDSPTGSANSKSANAAV 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,872,967
Number of Sequences: 1393205
Number of extensions: 13237876
Number of successful extensions: 172803
Number of sequences better than 10.0: 2074
Number of HSP's better than 10.0 without gapping: 85409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145218
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
