Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004170A_C01 KMC004170A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193161.1| hypothetical protein; protein id: At4g14250.1 [... 74 4e-18
ref|NP_566733.1| Expressed protein; protein id: At3g23605.1, sup... 73 4e-17
gb|AAM66019.1| unknown [Arabidopsis thaliana] 73 4e-17
ref|NP_176165.1| hypothetical protein; protein id: At1g59550.1 [... 71 6e-16
gb|AAF79774.1|AC009317_33 T30E16.10 [Arabidopsis thaliana] 71 6e-16
>ref|NP_193161.1| hypothetical protein; protein id: At4g14250.1 [Arabidopsis
thaliana] gi|7485039|pir||B71404 hypothetical protein -
Arabidopsis thaliana gi|2244781|emb|CAB10204.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268130|emb|CAB78467.1| hypothetical protein
[Arabidopsis thaliana]
Length = 724
Score = 73.6 bits (179), Expect(2) = 4e-18
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = -1
Query: 500 YPTLPEEPK--LERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDETKLFR 327
+P L EEPK +R+++C + VR PDGRR QR FL+S+PIQLLWSF + + E E K F+
Sbjct: 630 FPVLTEEPKGDCDRSVVCSLCVRFPDGRRKQRKFLKSEPIQLLWSFCYSHIDESEKKAFK 689
Query: 326 LTQA 315
L QA
Sbjct: 690 LVQA 693
Score = 73.2 bits (178), Expect(2) = 6e-18
Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = -1
Query: 500 YPTLPEEPKLE--RNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDETKLFR 327
+P L EEPK + R+++C + VR PDGRR QR FL+S+PIQLLWSF + + E E K F+
Sbjct: 287 FPVLTEEPKADCDRSVVCSICVRFPDGRRKQRKFLKSEPIQLLWSFCYSHMEESEKKEFK 346
Query: 326 LTQA 315
L QA
Sbjct: 347 LVQA 350
Score = 38.9 bits (89), Expect(2) = 4e-18
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = -2
Query: 313 LPGASKNLDYESNSTFEESGLANSM 239
+PGASK LD E+++TF++SGLANS+
Sbjct: 694 IPGASKTLDCEADATFDQSGLANSL 718
Score = 38.5 bits (88), Expect(2) = 6e-18
Identities = 20/38 (52%), Positives = 26/38 (67%), Gaps = 2/38 (5%)
Frame = -2
Query: 313 LPGASKNLDYESNSTFEESGLANSM--TFSDLGLSSDS 206
+PGASK LDY + +TF +SG+ANSM D+ L DS
Sbjct: 351 IPGASKTLDYGAKATFVQSGIANSMISVTWDINLPLDS 388
>ref|NP_566733.1| Expressed protein; protein id: At3g23605.1, supported by cDNA:
7103. [Arabidopsis thaliana] gi|9294517|dbj|BAB02779.1|
emb|CAB10204.1~gene_id:MDB19.9~similar to unknown
protein [Arabidopsis thaliana]
Length = 152
Score = 73.2 bits (178), Expect(2) = 4e-17
Identities = 33/66 (50%), Positives = 52/66 (78%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 YPTLPEEPK--LERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDET---K 336
+P LPEEP +++++LCR+ VRLPDGRR+QR+FL+S+ +QLLWSF +Q+G++ + +
Sbjct: 55 FPNLPEEPNRDMDQSVLCRICVRLPDGRRIQRSFLKSESVQLLWSFCYSQIGDESSERKR 114
Query: 335 LFRLTQ 318
F+L Q
Sbjct: 115 RFKLIQ 120
Score = 35.8 bits (81), Expect(2) = 4e-17
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -2
Query: 310 PGASKNLDYESNSTFEESGLANSM 239
PG KNL + SN+TFE+SGLANS+
Sbjct: 123 PGDYKNLYFGSNTTFEQSGLANSL 146
>gb|AAM66019.1| unknown [Arabidopsis thaliana]
Length = 145
Score = 73.2 bits (178), Expect(2) = 4e-17
Identities = 33/66 (50%), Positives = 52/66 (78%), Gaps = 5/66 (7%)
Frame = -1
Query: 500 YPTLPEEPK--LERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDET---K 336
+P LPEEP +++++LCR+ VRLPDGRR+QR+FL+S+ +QLLWSF +Q+G++ + +
Sbjct: 48 FPNLPEEPNRDMDQSVLCRICVRLPDGRRIQRSFLKSESVQLLWSFCYSQIGDESSERKR 107
Query: 335 LFRLTQ 318
F+L Q
Sbjct: 108 RFKLIQ 113
Score = 35.8 bits (81), Expect(2) = 4e-17
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -2
Query: 310 PGASKNLDYESNSTFEESGLANSM 239
PG KNL + SN+TFE+SGLANS+
Sbjct: 116 PGDYKNLYFGSNTTFEQSGLANSL 139
>ref|NP_176165.1| hypothetical protein; protein id: At1g59550.1 [Arabidopsis
thaliana] gi|14475951|gb|AAK62798.1|AC027036_19
hypothetical protein [Arabidopsis thaliana]
Length = 307
Score = 70.9 bits (172), Expect(2) = 6e-16
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = -1
Query: 500 YPTLPEEPK--LERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDETKLFR 327
+P L +EPK +R+++C + VR P+GRR QR FL+S+P+QLLWSF + + E + K F+
Sbjct: 213 FPVLTKEPKGDCDRSVVCSISVRFPNGRRKQRKFLKSEPVQLLWSFCYSHMDESDNKAFK 272
Query: 326 LTQA 315
L QA
Sbjct: 273 LVQA 276
Score = 34.3 bits (77), Expect(2) = 6e-16
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -2
Query: 313 LPGASKNLDYESNSTFEESGLANSM 239
+PGASK LDY + ++F++ G+ANS+
Sbjct: 277 IPGASKTLDYGAEASFDQYGIANSI 301
>gb|AAF79774.1|AC009317_33 T30E16.10 [Arabidopsis thaliana]
Length = 268
Score = 70.9 bits (172), Expect(2) = 6e-16
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = -1
Query: 500 YPTLPEEPK--LERNLLCRVGVRLPDGRRVQRNFLRSDPIQLLWSFISAQLGEDETKLFR 327
+P L +EPK +R+++C + VR P+GRR QR FL+S+P+QLLWSF + + E + K F+
Sbjct: 174 FPVLTKEPKGDCDRSVVCSISVRFPNGRRKQRKFLKSEPVQLLWSFCYSHMDESDNKAFK 233
Query: 326 LTQA 315
L QA
Sbjct: 234 LVQA 237
Score = 34.3 bits (77), Expect(2) = 6e-16
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = -2
Query: 313 LPGASKNLDYESNSTFEESGLANSM 239
+PGASK LDY + ++F++ G+ANS+
Sbjct: 238 IPGASKTLDYGAEASFDQYGIANSI 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,676,657
Number of Sequences: 1393205
Number of extensions: 8296212
Number of successful extensions: 15026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15020
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
