Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004169A_C01 KMC004169A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198863.1| putative protein; protein id: At5g40470.1, supp... 64 7e-10
gb|EAA12920.1| agCP11351 [Anopheles gambiae str. PEST] 45 6e-04
gb|AAO51915.1| similar to Dictyostelium discoideum (Slime mold).... 42 0.005
pir||T48193 hypothetical protein F7A7.240 - Arabidopsis thaliana... 40 0.014
ref|NP_568094.1| F-box protein family, AtFBL3; protein id: At5g0... 40 0.014
>ref|NP_198863.1| putative protein; protein id: At5g40470.1, supported by cDNA:
gi_16612313 [Arabidopsis thaliana]
gi|9759491|dbj|BAB10496.1| gene_id:K21I16.4~similar to
unknown protein~sp|P34284 [Arabidopsis thaliana]
gi|16612314|gb|AAL27516.1|AF439848_1 AT5g40470/K21I16_20
[Arabidopsis thaliana]
Length = 496
Score = 64.3 bits (155), Expect = 7e-10
Identities = 30/80 (37%), Positives = 56/80 (69%)
Frame = -1
Query: 479 LIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEE 300
L+++ LR CK +T A +V++ ++C +L+ +D++ C IE + +E FV + L+++ VEE
Sbjct: 411 LVEVVLRDCKHLTGAVLVALNKNCVKLKTLDILGCRLIEPDDVEGFVMKTQCLKKLVVEE 470
Query: 299 SKLSDAAKMWASNKFIEVVV 240
+++++A AS+KFIE VV
Sbjct: 471 NQITEAILKLASSKFIETVV 490
>gb|EAA12920.1| agCP11351 [Anopheles gambiae str. PEST]
Length = 421
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/65 (32%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Frame = -1
Query: 470 LRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEE-SK 294
LRLRGC+ + S ++ ++ C +E++D+ +C I AI+ KN ++L + +E S+
Sbjct: 81 LRLRGCQSVGSHSIRTLANYCHNIEHLDLSECKKISDVAIQQLSKNCAKLTAINLESCSQ 140
Query: 293 LSDAA 279
+SD++
Sbjct: 141 ISDSS 145
Score = 32.7 bits (73), Expect = 2.2
Identities = 13/60 (21%), Positives = 29/60 (47%)
Frame = -1
Query: 470 LRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEESKL 291
L + GC T + +++ ++CK LE +D+ +C I ++ L ++ + +L
Sbjct: 263 LEVAGCAQFTDSGFIALAKNCKYLERMDLEECSLITDATLQNLALGCPSLEKLTLSHCEL 322
>gb|AAO51915.1| similar to Dictyostelium discoideum (Slime mold). Non-receptor
tyrosine kinase spore lysis A (EC 2.7.1.112) (Tyrosine-
protein kinase 1)
Length = 2159
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/63 (31%), Positives = 37/63 (57%)
Frame = -1
Query: 482 NLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVE 303
NL+ ++L G KGIT ++ + +C+ L N+D++ C I + ++L KN +L + +
Sbjct: 1715 NLLSIKLSG-KGITDQSLKKISENCQSLTNLDLVLCENITDQGVQLLGKNCLKLSSINLF 1773
Query: 302 ESK 294
SK
Sbjct: 1774 SSK 1776
Score = 38.1 bits (87), Expect = 0.052
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 1/69 (1%)
Frame = -1
Query: 482 NLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVE 303
NL + L+GC +++ +VS+ R C L VD+ C+ I AI ++N +L +++
Sbjct: 1613 NLEVIILKGCYQLSNPGIVSLARGCPNLYVVDLSGCMKITDFAIHELLQNCKQLHTLDLR 1672
Query: 302 ES-KLSDAA 279
+ L+D A
Sbjct: 1673 KCVNLTDGA 1681
Score = 37.0 bits (84), Expect = 0.12
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 482 NLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELF 342
NL + L GC IT A+ +L++CK+L +D+ +C+ + A + F
Sbjct: 1639 NLYVVDLSGCMKITDFAIHELLQNCKQLHTLDLRKCVNLTDGAFQSF 1685
>pir||T48193 hypothetical protein F7A7.240 - Arabidopsis thaliana
gi|7327831|emb|CAB82288.1| putative protein [Arabidopsis
thaliana]
Length = 618
Score = 40.0 bits (92), Expect = 0.014
Identities = 18/67 (26%), Positives = 34/67 (49%)
Frame = -1
Query: 461 RGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEESKLSDA 282
RGC ITS + ++ CKRL VD+ +C I + S L+++ V ++ +++
Sbjct: 469 RGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLALAHFSQNLKQINVSDTAVTEV 528
Query: 281 AKMWASN 261
+ +N
Sbjct: 529 GLLSLAN 535
>ref|NP_568094.1| F-box protein family, AtFBL3; protein id: At5g01720.1 [Arabidopsis
thaliana]
Length = 614
Score = 40.0 bits (92), Expect = 0.014
Identities = 18/67 (26%), Positives = 34/67 (49%)
Frame = -1
Query: 461 RGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEESKLSDA 282
RGC ITS + ++ CKRL VD+ +C I + S L+++ V ++ +++
Sbjct: 465 RGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLALAHFSQNLKQINVSDTAVTEV 524
Query: 281 AKMWASN 261
+ +N
Sbjct: 525 GLLSLAN 531
Score = 34.3 bits (77), Expect = 0.75
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = -1
Query: 482 NLIDLRLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEV 306
+L +L L GC G+ ++ S+ CK L+ +D C + + + + L+R+++
Sbjct: 227 HLEELLLEGCFGVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDL 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,004,915
Number of Sequences: 1393205
Number of extensions: 7298905
Number of successful extensions: 18681
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 17884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18662
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
