Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004167A_C01 KMC004167A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S25298 extensin (clone Tom J-10) - tomato gi|170442|gb|AAA3... 37 0.16
dbj|BAB40153.1| P0707D10.11 [Oryza sativa (japonica cultivar-gro... 35 0.46
pir||T07623 extensin homolog HRGP2 - soybean (fragment) gi|34745... 35 0.60
gb|AAG10685.1| chimeric fusion glycoprotein [Chimeric human para... 34 1.0
ref|NP_566274.1| putative RING zinc finger protein; protein id: ... 33 1.3
>pir||S25298 extensin (clone Tom J-10) - tomato gi|170442|gb|AAA34163.1|
extensin (class I)
Length = 388
Score = 36.6 bits (83), Expect = 0.16
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -3
Query: 475 YASPPPPPYY*YF*DPPSPSFPSSY 401
Y SPPPPPYY PPSPS P Y
Sbjct: 240 YKSPPPPPYYYKSPPPPSPSPPPPY 264
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 287 PPSPSPPPPYYYKSPPPPSPSPPPPY 312
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 303 PPSPSPPPPYYYKCPPPPSPSPPPPY 328
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 319 PPSPSPPPPYYYKSPPPPSPSPPPPY 344
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 271 PPSPSPPPPYYYKSPPPPSPSPPPPY 296
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 255 PPSPSPPPPYYYKSPPPPSPSPPPPY 280
>dbj|BAB40153.1| P0707D10.11 [Oryza sativa (japonica cultivar-group)]
Length = 183
Score = 35.0 bits (79), Expect = 0.46
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P A PPPPPYY Y+ PP +P SY
Sbjct: 52 PPALPPPPPYY-YYSPPPPAYYPGSY 76
>pir||T07623 extensin homolog HRGP2 - soybean (fragment)
gi|347455|gb|AAA33971.1| hydroxyproline-rich
glycoprotein
Length = 169
Score = 34.7 bits (78), Expect = 0.60
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY + PPSPS PS Y
Sbjct: 43 PPSPSPPPPYYYHSPPPPSPSPPSPY 68
Score = 32.7 bits (73), Expect = 2.3
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY + PPSPS P Y
Sbjct: 27 PPSPSPPPPYYYHSPPPPSPSPPPPY 52
Score = 31.2 bits (69), Expect = 6.6
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -3
Query: 478 PYASPPPPPYY*YF*DPPSPSFPSSY 401
P + PPPPYY PPSPS P Y
Sbjct: 11 PPSPSPPPPYYYKSPPPPSPSPPPPY 36
>gb|AAG10685.1| chimeric fusion glycoprotein [Chimeric human parainfluenza virus
rPIV3-2]
Length = 536
Score = 33.9 bits (76), Expect = 1.0
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Frame = -2
Query: 440 LLRPTFTFLPL*LRIT---NAMIRQHLFFI*MNVINLSSKE-------IDKSLQSS*EWQ 291
++ TF+F RIT NA I N+++LS + I+KSL+S+ +W
Sbjct: 417 MMLDTFSF-----RITSTFNATYVTDFSMINANIVHLSPLDLSNQINSINKSLKSAEDWI 471
Query: 290 RKNVCIE*RDHNSWLYRDKLAASNYTLSSSSLLMQVVCCLWDFIVIASFISYYYILK 120
D N + + + A + Y+LS+ +L++ V+ + ++IA I YY I K
Sbjct: 472 A--------DSNFFANQARTAKTLYSLSAIALILSVITLVVVGLLIAYIIKYYRIQK 520
>ref|NP_566274.1| putative RING zinc finger protein; protein id: At3g06140.1,
supported by cDNA: 40787. [Arabidopsis thaliana]
gi|21593638|gb|AAM65605.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 359
Score = 33.5 bits (75), Expect = 1.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 466 PPPPPYY*YF*DPPSPSFPSSYE 398
PPPPPYY PP P FP Y+
Sbjct: 24 PPPPPYYYLDPPPPPPPFPPHYD 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,849,733
Number of Sequences: 1393205
Number of extensions: 8166561
Number of successful extensions: 27932
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 23250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26926
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
