Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004166A_C01 KMC004166A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196885.1| putative protein; protein id: At5g13810.1, supp... 52 3e-06
dbj|BAC15489.1| hypothetical protein~similar to Arabidopsis thal... 50 1e-05
pir||T47767 hypothetical protein F24I3.150 - Arabidopsis thalian... 45 6e-04
ref|NP_567043.1| putative protein; protein id: At3g57070.1, supp... 45 6e-04
ref|NP_181664.1| unknown protein; protein id: At2g41330.1, suppo... 45 6e-04
>ref|NP_196885.1| putative protein; protein id: At5g13810.1, supported by cDNA:
124023., supported by cDNA: gi_14532459, supported by
cDNA: gi_16974532 [Arabidopsis thaliana]
gi|10177647|dbj|BAB11109.1| contains similarity to
unknown protein~emb|CAB72177.1~gene_id:MAC12.24
[Arabidopsis thaliana] gi|14532460|gb|AAK63958.1|
AT5g13810/MAC12_24 [Arabidopsis thaliana]
gi|16974533|gb|AAL31176.1| AT5g13810/MAC12_24
[Arabidopsis thaliana] gi|21618248|gb|AAM67298.1|
unknown [Arabidopsis thaliana]
Length = 274
Score = 52.4 bits (124), Expect = 3e-06
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -2
Query: 507 KVFDEDEGLLKRCLECNENGLVRCPGCCS 421
K+FDEDE +KRC ECNENGL+RCP C S
Sbjct: 246 KLFDEDEDRVKRCPECNENGLIRCPDCSS 274
>dbj|BAC15489.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g13810 [Oryza sativa (japonica cultivar-group)]
Length = 211
Score = 50.1 bits (118), Expect = 1e-05
Identities = 20/29 (68%), Positives = 24/29 (81%)
Frame = -2
Query: 507 KVFDEDEGLLKRCLECNENGLVRCPGCCS 421
KVF E+E ++RC +CNENGLVRCP CCS
Sbjct: 183 KVFVEEEDRVQRCGDCNENGLVRCPNCCS 211
>pir||T47767 hypothetical protein F24I3.150 - Arabidopsis thaliana
gi|6911877|emb|CAB72177.1| putative protein [Arabidopsis
thaliana]
Length = 417
Score = 44.7 bits (104), Expect = 6e-04
Identities = 18/28 (64%), Positives = 21/28 (74%)
Frame = -2
Query: 507 KVFDEDEGLLKRCLECNENGLVRCPGCC 424
KVF+E + KRC +CNENGLVRC CC
Sbjct: 389 KVFEEQDERFKRCPKCNENGLVRCRVCC 416
>ref|NP_567043.1| putative protein; protein id: At3g57070.1, supported by cDNA:
gi_15451041 [Arabidopsis thaliana]
gi|15451042|gb|AAK96792.1| putative protein [Arabidopsis
thaliana] gi|23197624|gb|AAN15339.1| putative protein
[Arabidopsis thaliana]
Length = 302
Score = 44.7 bits (104), Expect = 6e-04
Identities = 18/28 (64%), Positives = 21/28 (74%)
Frame = -2
Query: 507 KVFDEDEGLLKRCLECNENGLVRCPGCC 424
KVF+E + KRC +CNENGLVRC CC
Sbjct: 274 KVFEEQDERFKRCPKCNENGLVRCRVCC 301
>ref|NP_181664.1| unknown protein; protein id: At2g41330.1, supported by cDNA:
gi_18491270 [Arabidopsis thaliana]
gi|25342044|pir||D84840 hypothetical protein At2g41330
[imported] - Arabidopsis thaliana
gi|3894191|gb|AAC78540.1| unknown protein [Arabidopsis
thaliana] gi|18491271|gb|AAL69460.1| At2g41330/F13H10.12
[Arabidopsis thaliana]
Length = 402
Score = 44.7 bits (104), Expect = 6e-04
Identities = 19/28 (67%), Positives = 20/28 (70%)
Frame = -2
Query: 507 KVFDEDEGLLKRCLECNENGLVRCPGCC 424
KVF+E E KRC CNENGLVRC CC
Sbjct: 374 KVFEEQEDGFKRCNGCNENGLVRCNKCC 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,345,556
Number of Sequences: 1393205
Number of extensions: 9687590
Number of successful extensions: 36413
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 30203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35058
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
