>KMC004165A_C01 KMC004165A_c01
aaatagaaatcataaataaattaaaagatatcttgacacatGTGTTAAAGTTACTACTTC
TAAAAATAGTTAATCTCAAAAGAAGAGTTTACATCAAGCTAACTTAACTGTTACAGAATA
ATGAACAAATACTGTAGGGACTTTTGCAGCCAAAGCAACTTGAGTCCATGATAACACACT
AGCTAAACCTAAGATCTATAACTTGTTAAGACTCTTCATTCCTTAAGTCGTCGTCTTTAC
ATGATTGCCTTGTGGATATTCTCCAGTCTTTGGTGCAGATGGTTTTTGAAATAAAAGAGT
AAGCTGATCAAGGAAAAACATATTCTTCGTTTGCTCTAACTGCTGCCTTTCTTTTTCCAT
CAGCAGGTCCAAATCTTCAAAATGAACAAGCTTGTCTTGGATATTTTTCATCTGAACTTC
TATAATCTCAGAAATTGCCTTTTCCACATCTGATTCATCCTTCTCAAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004165A_C01 KMC004165A_c01
         (468 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsi...    79  2e-14
pir||T26449 hypothetical protein Y113G7B.23 - Caenorhabditis ele...    47  1e-04
ref|NP_507906.1| Phasmid Socket Absent 1 PSA-1, required for an ...    47  1e-04
ref|NP_033237.1| SWI/SNF related, matrix associated, actin depen...    47  1e-04
gb|EAA08414.1| agCP2888 [Anopheles gambiae str. PEST]                  46  2e-04

>gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana]
           gi|28827566|gb|AAO50627.1| putative SWI/SNF complex
           subunit SW13 [Arabidopsis thaliana]
          Length = 469

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 36/68 (52%), Positives = 51/68 (74%)
 Frame = -1

Query: 468 LEKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQLTLLF 289
           +EK+E +VE AI E +EV+MK I+D++VHFE LDL ME+ R+QLE+ +N+ F+DQL + F
Sbjct: 396 IEKEEHEVEGAIKETVEVEMKKIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFF 455

Query: 288 QKPSAPKT 265
               A KT
Sbjct: 456 HTRKARKT 463

>pir||T26449 hypothetical protein Y113G7B.23 - Caenorhabditis elegans
          Length = 366

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 37/52 (70%)
 Frame = -1

Query: 459 DESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQ 304
           +E  ++  +++++E QMK ++ KL HF++L+ +M+KER+ LE  ++   L++
Sbjct: 45  EERRIKSLVAQLVETQMKKLEMKLRHFDELEQIMDKERESLEYQRHQLILER 96

>ref|NP_507906.1| Phasmid Socket Absent 1 PSA-1, required for an asymmetric cell
           division; SWI3/SNF-related matrix-associated
           actin-dependent regulator of chromatin-like protein
           (85.4 kD) (psa-1) [Caenorhabditis elegans]
           gi|6456807|emb|CAB54337.2| C. elegans PSA-1 protein
           (corresponding sequence Y113G7B.23) [Caenorhabditis
           elegans] gi|10312096|gb|AAG16654.1|AF230279_1 SWI3-like
           protein; PSA-1 [Caenorhabditis elegans]
          Length = 789

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 37/52 (70%)
 Frame = -1

Query: 459 DESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQ 304
           +E  ++  +++++E QMK ++ KL HF++L+ +M+KER+ LE  ++   L++
Sbjct: 468 EERRIKSLVAQLVETQMKKLEMKLRHFDELEQIMDKERESLEYQRHQLILER 519

>ref|NP_033237.1| SWI/SNF related, matrix associated, actin dependent regulator of
            chromatin, subfamily c, member 1 [Mus musculus]
            gi|7513855|pir||T30967 transcription activator SRG3 -
            mouse gi|1816635|gb|AAB42085.1| SRG3 [Mus musculus]
          Length = 1100

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 28/98 (28%), Positives = 50/98 (50%), Gaps = 12/98 (12%)
 Frame = -1

Query: 459  DESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNM-------FFLDQL 301
            +E  ++  ++ ++E QMK ++ KL HFE+L+ +M++E++ LEQ +         F ++QL
Sbjct: 883  EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQL 942

Query: 300  TLL-----FQKPSAPKTGEYPQGNHVKTTT*GMKSLNK 202
                     Q     + G+ PQ  H  T   GM  L +
Sbjct: 943  KYAELRARQQMEQQQQHGQTPQQAHQHTGGPGMAPLGR 980

>gb|EAA08414.1| agCP2888 [Anopheles gambiae str. PEST]
          Length = 2735

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
 Frame = -1

Query: 459  DESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKE-------RQQLEQTKNMFFLDQL 301
            +E  ++  ++ ++E QMK ++ KL HFE+L+  ME+E       RQQL Q +  F L+QL
Sbjct: 2494 EERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQL 2553

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,991,003
Number of Sequences: 1393205
Number of extensions: 6060931
Number of successful extensions: 15570
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 15239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15554
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MR009h07_f BP076665 1 399 2 MF088b12_f BP032916 42 468 3 MR083a11_f BP082358 50 444

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