KMC004164A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004164A_C01 KMC004164A_c01
gacaaaacaaaacctacactaaaaggtgccttatatcattatatcttacaacataagctg
atcagaagtgcacagccctAACTAAATAAGTTATTGTTCGACATTCATTCCATGAAAATT
TGGCAAAATCTAGAAAACTACAATCTGATACAGTTGAAGAAAATCCAACCATAAGTCTAC
TTATCTAGAAAAACAGGAAATCAAAACCCCCTCATAGAATGACTTCTACAATTATAATTT
TGAGGACGGTTATCAAAAACTATACAGAGATACTCAGCTGAGAATCTTCGTTTTGCTGCC
AAAACTGCCATTCCCACCTTCAATGAGACAAAATCTGCGAATAAATTTATTACCAATTAC
AACAAAACCTTGAGCCAAATACTCAGGCTCAGCTGACCATCACCAATTACAACAAAACCT
TGAGCCAAATACTCAGGCTCAGCTGACCATCACCGCAAGATATTCACGAATGCCATCAAT
GAATCAACATCTCTCTTTTCCGAAGGATACTTAATTGGTCGGGAAGAGTGTTTGGGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004164A_C01 KMC004164A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10065 phosphoadenylyl-sulfate reductase (thioredoxin) (EC ... 57 1e-07
gb|AAB05871.2| PAPS-reductase-like protein [Catharanthus roseus] 57 1e-07
gb|AAL66290.1|AF452450_1 adenosine 5'-phosphosulfate reductase [... 54 9e-07
emb|CAB65911.1| adenosine 5'-phosphosulphate reductase [Lemna mi... 53 3e-06
ref|NP_193930.1| PRH26 protein; protein id: At4g21990.1, support... 51 1e-05
>pir||T10065 phosphoadenylyl-sulfate reductase (thioredoxin) (EC 1.8.4.8)
precursor, chloroplast - Madagascar periwinkle
Length = 463
Score = 57.0 bits (136), Expect = 1e-07
Identities = 26/28 (92%), Positives = 27/28 (95%)
Frame = -2
Query: 536 PKHSSRPIKYPSEKRDVDSLMAFVNILR 453
PKHSS+PIKYPSEKRDVDSLMAFVN LR
Sbjct: 436 PKHSSKPIKYPSEKRDVDSLMAFVNALR 463
>gb|AAB05871.2| PAPS-reductase-like protein [Catharanthus roseus]
Length = 464
Score = 57.0 bits (136), Expect = 1e-07
Identities = 26/28 (92%), Positives = 27/28 (95%)
Frame = -2
Query: 536 PKHSSRPIKYPSEKRDVDSLMAFVNILR 453
PKHSS+PIKYPSEKRDVDSLMAFVN LR
Sbjct: 437 PKHSSKPIKYPSEKRDVDSLMAFVNALR 464
>gb|AAL66290.1|AF452450_1 adenosine 5'-phosphosulfate reductase [Glycine max]
Length = 470
Score = 54.3 bits (129), Expect = 9e-07
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2
Query: 536 PKHSSRPIKYPSEKRDVDSLMAFVNILR 453
PKHSS+PIKYPSEKRDVDSL AFVN LR
Sbjct: 443 PKHSSQPIKYPSEKRDVDSLTAFVNALR 470
>emb|CAB65911.1| adenosine 5'-phosphosulphate reductase [Lemna minor]
Length = 459
Score = 52.8 bits (125), Expect = 3e-06
Identities = 22/28 (78%), Positives = 27/28 (95%)
Frame = -2
Query: 536 PKHSSRPIKYPSEKRDVDSLMAFVNILR 453
PKH+S+P+KYPSE+RDVDSL+AFVN LR
Sbjct: 432 PKHASKPVKYPSEQRDVDSLLAFVNALR 459
>ref|NP_193930.1| PRH26 protein; protein id: At4g21990.1, supported by cDNA: 36866.,
supported by cDNA: gi_15809815, supported by cDNA:
gi_16226613, supported by cDNA: gi_17065177, supported
by cDNA: gi_20259941 [Arabidopsis thaliana]
gi|24211446|sp|P92980|APR3_ARATH 5'-adenylylsulfate
reductase 3, chloroplast precursor (Adenosine
5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 3)
(APS sulfotransferase 3) (Thioredoxin independent APS
reductase 3) (3'-phosphoadenosine-5'-phosphosulfate
reductase homolog 26) (PAPS reductase homolog 26)
(Prh-26) gi|11358631|pir||T49106 PRH26 protein -
Arabidopsis thaliana gi|2738760|gb|AAC26981.1|
5'-adenylylsulfate reductase [Arabidopsis thaliana]
gi|2961344|emb|CAA18102.1| PRH26 protein [Arabidopsis
thaliana] gi|7269044|emb|CAB79154.1| PRH26 protein
[Arabidopsis thaliana] gi|15809816|gb|AAL06836.1|
AT4g21990/F1N20_90 [Arabidopsis thaliana]
gi|16226614|gb|AAL16214.1|AF428445_1 AT4g21990/F1N20_90
[Arabidopsis thaliana] gi|17065178|gb|AAL32743.1| PRH26
protein [Arabidopsis thaliana]
gi|20259942|gb|AAM13318.1| PRH26 protein [Arabidopsis
thaliana] gi|21655305|gb|AAM65364.1| AT4g21990/F1N20_90
[Arabidopsis thaliana]
Length = 458
Score = 50.8 bits (120), Expect = 1e-05
Identities = 22/28 (78%), Positives = 27/28 (95%)
Frame = -2
Query: 536 PKHSSRPIKYPSEKRDVDSLMAFVNILR 453
PK+SSRPIKYPSEKRDVDSL +F+N++R
Sbjct: 431 PKNSSRPIKYPSEKRDVDSLTSFLNLVR 458
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,978,662
Number of Sequences: 1393205
Number of extensions: 8343750
Number of successful extensions: 17223
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17207
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MWL059h04_f |
AV769612 |
1 |
537 |
2 |
MR009h06_f |
BP076664 |
80 |
460 |
|
Lotus japonicus
Kazusa DNA Research Institute