Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004162A_C01 KMC004162A_c01
(440 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08531.1| dbj|BAA95718.1~gene_id:MNF13.13~similar to unkno... 44 5e-04
gb|AAM64497.1| unknown [Arabidopsis thaliana] 42 0.002
ref|NP_566817.1| expressed protein; protein id: At3g27420.1, sup... 42 0.002
ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1... 32 2.3
ref|XP_224708.1| similar to cytochrome P450 CYP4F18 [Mus musculu... 31 3.0
>dbj|BAB08531.1| dbj|BAA95718.1~gene_id:MNF13.13~similar to unknown protein
[Arabidopsis thaliana]
Length = 327
Score = 43.9 bits (102), Expect = 5e-04
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = -2
Query: 439 NLDRVAEIICRSRPA--EELSCDKIFVDLEKEDNATLWRLYYYVEAVEKAKSLS 284
NL+RVA II A +E+ D +++E+ED LWRL+Y+V AV+ A+ L+
Sbjct: 273 NLERVAGIIKNHYVALGKEMPDDVFVINMEEEDKVLLWRLHYFVVAVQSARKLA 326
>gb|AAM64497.1| unknown [Arabidopsis thaliana]
Length = 244
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = -2
Query: 439 NLDRVAEIICRSRPAEELSC-DKIFVDLEKEDNATLWRLYYYVEAVEKAKS 290
NL+RVAEI+ A DK+ V+L++ D LWRL++YV AV++ +S
Sbjct: 190 NLNRVAEIVGNHCIASGRDFNDKVIVNLDQADKVMLWRLHFYVGAVKRPRS 240
>ref|NP_566817.1| expressed protein; protein id: At3g27420.1, supported by cDNA:
29696., supported by cDNA: gi_18252996 [Arabidopsis
thaliana] gi|18252997|gb|AAL62425.1| unknown protein
[Arabidopsis thaliana] gi|25084129|gb|AAN72182.1|
unknown protein [Arabidopsis thaliana]
Length = 244
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = -2
Query: 439 NLDRVAEIICRSRPAEELSC-DKIFVDLEKEDNATLWRLYYYVEAVEKAKS 290
NL+RVAEI+ A DK+ V+L++ D LWRL++YV AV++ +S
Sbjct: 190 NLNRVAEIVGNHCIASGRDFNDKVIVNLDQADKVMLWRLHFYVGAVKRPRS 240
>ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1g06230.1
[Arabidopsis thaliana] gi|25406905|pir||A86198
hypothetical protein [imported] - Arabidopsis thaliana
gi|8844128|gb|AAF80220.1|AC025290_9 Contains similarity
to a Ring3 protein from Homo sapiens gi|133157 and
contains a bromodomain PF|00439. EST gb|F14211 comes
from this gene. [Arabidopsis thaliana]
Length = 766
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/49 (32%), Positives = 27/49 (54%)
Frame = -2
Query: 436 LDRVAEIICRSRPAEELSCDKIFVDLEKEDNATLWRLYYYVEAVEKAKS 290
LD + +I+ + A +L ++I VD++ D TLW L +V +K S
Sbjct: 627 LDAIVQIVNKRNTAVKLRDEEIEVDIDSVDPETLWELDRFVTNYKKGLS 675
>ref|XP_224708.1| similar to cytochrome P450 CYP4F18 [Mus musculus] [Rattus
norvegicus]
Length = 629
Score = 31.2 bits (69), Expect = 3.0
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 138 SIPVSQHIIYPLYS*EDMKILLMSSDESELQL-SLSRTFDDL 260
++ + H+++PL E L+ SS+E L + SLSRTF D+
Sbjct: 109 NLGIDFHLVFPLCDLETFAFLIQSSEEGLLYIQSLSRTFRDV 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,601,155
Number of Sequences: 1393205
Number of extensions: 6734343
Number of successful extensions: 17035
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17028
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
