Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004159A_C01 KMC004159A_c01
(390 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704440.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.3
gb|EAA16115.1| hypothetical protein [Plasmodium yoelii yoelii] 31 4.3
ref|NP_014834.1| Role in silencing; Ris1p [Saccharomyces cerevis... 30 5.6
gb|EAA21403.1| hypothetical protein [Plasmodium yoelii yoelii] 30 7.3
>ref|NP_704440.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499179|emb|CAD51259.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1210
Score = 30.8 bits (68), Expect = 4.3
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 2/48 (4%)
Frame = +2
Query: 32 QIHDKHNVQNLNLIHKLKQRHFSM--PLLRKHFLFYDNKIQLQSITTT 169
++ D N +N N H++ ++ P+ R HF + KI L SIT T
Sbjct: 302 RLKDLDNPENTNNAHQVSDEDDNLLRPIKRLHFYLLNKKINLHSITVT 349
>gb|EAA16115.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 604
Score = 30.8 bits (68), Expect = 4.3
Identities = 16/52 (30%), Positives = 32/52 (60%), Gaps = 4/52 (7%)
Frame = +2
Query: 41 DKHNVQNL-NLIH---KLKQRHFSMPLLRKHFLFYDNKIQLQSITTTICLYQ 184
+K VQ+L N++ K K+ + + L++ LFY N + L++I+ +C+Y+
Sbjct: 545 NKFTVQSLINILWSMTKQKRNNTTFALIKDKLLFYSNNLNLRNISIFLCVYK 596
>ref|NP_014834.1| Role in silencing; Ris1p [Saccharomyces cerevisiae]
gi|2132080|pir||S67083 hypothetical protein YOR191w -
yeast (Saccharomyces cerevisiae)
gi|1420457|emb|CAA99400.1| ORF YOR191w [Saccharomyces
cerevisiae]
Length = 1619
Score = 30.4 bits (67), Expect = 5.6
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = +2
Query: 56 QNLNLIHKLKQRHFSMPLLRKHFLFYDNKIQLQSITTT 169
+ LNL +K Q+ FS P + + L +NK Q++ +TTT
Sbjct: 195 EKLNLNNKPSQQQFSDPETKDNSLKSENKDQIKGVTTT 232
>gb|EAA21403.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 736
Score = 30.0 bits (66), Expect = 7.3
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 126 FSMTIKSNCNQLQQQSVYTNKNHLPSSTQLVQ 221
F++T+K N N L Q+ + NK H+P + Q
Sbjct: 503 FNITLKENLNFLTQKKIENNKEHVPYTMHQTQ 534
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,810,584
Number of Sequences: 1393205
Number of extensions: 5669057
Number of successful extensions: 11096
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11090
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
