Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004156A_C01 KMC004156A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_076395.1| ankyrin repeat and SOCS box-containing protein ... 35 0.39
sp|Q9WV72|ASB3_MOUSE Ankyrin repeat and SOCS box containing prot... 35 0.39
gb|AAH23086.1| ankyrin repeat and SOCS box-containing protein 3 ... 35 0.39
dbj|BAC24415.1| ompF [Wigglesworthia brevipalpis] 35 0.67
pir||T48003 hypothetical protein T17J13.70 - Arabidopsis thalian... 34 1.1
>ref|NP_076395.1| ankyrin repeat and SOCS box-containing protein 3; ankyrin
repeat-containing SOCS box protein 3 [Mus musculus]
gi|12845669|dbj|BAB26847.1| unnamed protein product [Mus
musculus]
Length = 525
Score = 35.4 bits (80), Expect = 0.39
Identities = 19/61 (31%), Positives = 36/61 (58%)
Frame = +1
Query: 79 SIRVHNSYSIETFLFYIIIFTH*LCTFDLETSIKMENFNKDVYNITTPSRRSLFNLMALY 258
S+R ++S++++ L + TH LC ++ S+K E+ + D++ P RSL N + LY
Sbjct: 444 SVRANSSWALQQHLASVPSLTH-LCRLEIRASLKAEHLHSDIFIHQLPLPRSLQNYL-LY 501
Query: 259 D 261
+
Sbjct: 502 E 502
>sp|Q9WV72|ASB3_MOUSE Ankyrin repeat and SOCS box containing protein 3 (ASB-3)
gi|5053026|gb|AAD38810.1|AF155354_1 ankyrin
repeat-containing protein Asb-3 [Mus musculus]
Length = 525
Score = 35.4 bits (80), Expect = 0.39
Identities = 19/61 (31%), Positives = 36/61 (58%)
Frame = +1
Query: 79 SIRVHNSYSIETFLFYIIIFTH*LCTFDLETSIKMENFNKDVYNITTPSRRSLFNLMALY 258
S+R ++S++++ L + TH LC ++ S+K E+ + D++ P RSL N + LY
Sbjct: 444 SVRANSSWALQQHLASVPSLTH-LCRLEIRASLKAEHLHSDIFIHQLPLPRSLQNYL-LY 501
Query: 259 D 261
+
Sbjct: 502 E 502
>gb|AAH23086.1| ankyrin repeat and SOCS box-containing protein 3 [Mus musculus]
Length = 525
Score = 35.4 bits (80), Expect = 0.39
Identities = 19/61 (31%), Positives = 36/61 (58%)
Frame = +1
Query: 79 SIRVHNSYSIETFLFYIIIFTH*LCTFDLETSIKMENFNKDVYNITTPSRRSLFNLMALY 258
S+R ++S++++ L + TH LC ++ S+K E+ + D++ P RSL N + LY
Sbjct: 444 SVRANSSWALQQHLASVPSLTH-LCRLEIRASLKAEHLHSDIFIHQLPLPRSLQNYL-LY 501
Query: 259 D 261
+
Sbjct: 502 E 502
>dbj|BAC24415.1| ompF [Wigglesworthia brevipalpis]
Length = 364
Score = 34.7 bits (78), Expect = 0.67
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 10 VSFYCNQNFCYIIVQLLKFNSVYSIRVHNSYSIETFLFYIIIFTH*LCTFDLETSIKMEN 189
+S+Y N+ Y I L+ NS+Y++ +H FL + + F L K N
Sbjct: 201 ISYYIKDNYLYFIASFLRNNSIYNLNMHEKKYNTNFLGMGLKYERFPFYFSLIHGKKWNN 260
Query: 190 FN 195
FN
Sbjct: 261 FN 262
>pir||T48003 hypothetical protein T17J13.70 - Arabidopsis thaliana
gi|6899921|emb|CAB71871.1| putative protein [Arabidopsis
thaliana]
Length = 470
Score = 33.9 bits (76), Expect = 1.1
Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 375 HSVSMITISDTVGDRI--NTKAFSNVIFYLNS 286
HSVS IT VGD + NTKAF N +FYLNS
Sbjct: 41 HSVS-ITEFGAVGDGVTLNTKAFQNALFYLNS 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,957,647
Number of Sequences: 1393205
Number of extensions: 7358477
Number of successful extensions: 16030
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16026
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
