Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004152A_C01 KMC004152A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179101.1| putative auxin-regulated protein; protein id: A... 227 1e-58
ref|NP_179898.1| unknown protein; protein id: At2g23170.1, suppo... 223 2e-57
pir||T52435 GH3 homolog [imported] - Arabidopsis thaliana (fragm... 216 2e-55
ref|NP_195455.1| auxin-responsive GH3 - like protein; protein id... 216 2e-55
pir||S17433 auxin-regulated protein GH3 - soybean gi|18591|emb|C... 216 2e-55
>ref|NP_179101.1| putative auxin-regulated protein; protein id: At2g14960.1
[Arabidopsis thaliana] gi|25345301|pir||D84523 probable
auxin-regulated protein [imported] - Arabidopsis
thaliana gi|3650037|gb|AAC61292.1| putative
auxin-regulated protein [Arabidopsis thaliana]
Length = 590
Score = 227 bits (578), Expect = 1e-58
Identities = 106/126 (84%), Positives = 114/126 (90%)
Frame = -3
Query: 654 YTSYADTRTIPGHYVIYWELLTKDSANSPSHEVLDRCCLEMEESLNSVYRQCRVSDHSIG 475
YTSYADT TIPGHYV+YWELL +D A PSHE L RCCL MEESLNSVYRQ RV+D+S+G
Sbjct: 464 YTSYADTSTIPGHYVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVG 523
Query: 474 PLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSKDLPHW 295
PLEIRVVR+GTFEELMDYAISRGASINQYKVPRCVNFTPI+ELLDSRVVS HFS LPHW
Sbjct: 524 PLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHW 583
Query: 294 TPERKR 277
TPER+R
Sbjct: 584 TPERRR 589
>ref|NP_179898.1| unknown protein; protein id: At2g23170.1, supported by cDNA:
gi_19699327 [Arabidopsis thaliana]
gi|7487246|pir||T00515 auxin-regulated protein GH3
homolog At2g23170 - Arabidopsis thaliana
gi|2642446|gb|AAB87114.1| unknown protein [Arabidopsis
thaliana] gi|19699328|gb|AAL91274.1| At2g23170/T20D16.20
[Arabidopsis thaliana] gi|23463057|gb|AAN33198.1|
At2g23170/T20D16.20 [Arabidopsis thaliana]
Length = 595
Score = 223 bits (568), Expect = 2e-57
Identities = 105/126 (83%), Positives = 115/126 (90%)
Frame = -3
Query: 654 YTSYADTRTIPGHYVIYWELLTKDSANSPSHEVLDRCCLEMEESLNSVYRQCRVSDHSIG 475
YTSYA+T+TIPGHYVIYWELL KD N P+ EV+ RCCLEMEESLNSVYRQ RV+D SIG
Sbjct: 470 YTSYAETKTIPGHYVIYWELLVKDQTNPPNDEVMARCCLEMEESLNSVYRQSRVADKSIG 529
Query: 474 PLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSKDLPHW 295
PLEIRVV++GTFEELMDYAISRGASINQYKVPRCV+FTPIMELLDSRVVS HFS LPHW
Sbjct: 530 PLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSTHFSPALPHW 589
Query: 294 TPERKR 277
+PER+R
Sbjct: 590 SPERRR 595
>pir||T52435 GH3 homolog [imported] - Arabidopsis thaliana (fragment)
gi|6520208|dbj|BAA87950.1| GH3 homolog [Arabidopsis
thaliana]
Length = 323
Score = 216 bits (551), Expect = 2e-55
Identities = 104/127 (81%), Positives = 116/127 (90%), Gaps = 1/127 (0%)
Frame = -3
Query: 654 YTSYADTRTIPGHYVIYWELLTKDSANS-PSHEVLDRCCLEMEESLNSVYRQCRVSDHSI 478
YTSYA+T+TIPGHYVIYWELL +D +N+ S EV+ +CCLEMEESLNSVYRQ RV+D SI
Sbjct: 197 YTSYAETKTIPGHYVIYWELLGRDQSNALMSEEVMAKCCLEMEESLNSVYRQSRVADKSI 256
Query: 477 GPLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSKDLPH 298
GPLEIRVVR+GTFEELMDYAISRGASINQYKVPRCV+FTPIMELLDSRVVS HFS LPH
Sbjct: 257 GPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSAHFSPSLPH 316
Query: 297 WTPERKR 277
W+PER+R
Sbjct: 317 WSPERRR 323
>ref|NP_195455.1| auxin-responsive GH3 - like protein; protein id: At4g37390.1,
supported by cDNA: gi_16648768 [Arabidopsis thaliana]
gi|7486506|pir||T04733 auxin-regulated protein GH3
homolog F6G17.40 - Arabidopsis thaliana
gi|4468805|emb|CAB38206.1| auxin-responsive GH3-like
protein [Arabidopsis thaliana]
gi|7270721|emb|CAB80404.1| auxin-responsive GH3-like
protein [Arabidopsis thaliana]
Length = 603
Score = 216 bits (551), Expect = 2e-55
Identities = 104/127 (81%), Positives = 116/127 (90%), Gaps = 1/127 (0%)
Frame = -3
Query: 654 YTSYADTRTIPGHYVIYWELLTKDSANS-PSHEVLDRCCLEMEESLNSVYRQCRVSDHSI 478
YTSYA+T+TIPGHYVIYWELL +D +N+ S EV+ +CCLEMEESLNSVYRQ RV+D SI
Sbjct: 477 YTSYAETKTIPGHYVIYWELLGRDQSNALMSEEVMAKCCLEMEESLNSVYRQSRVADKSI 536
Query: 477 GPLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSKDLPH 298
GPLEIRVVR+GTFEELMDYAISRGASINQYKVPRCV+FTPIMELLDSRVVS HFS LPH
Sbjct: 537 GPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSAHFSPSLPH 596
Query: 297 WTPERKR 277
W+PER+R
Sbjct: 597 WSPERRR 603
>pir||S17433 auxin-regulated protein GH3 - soybean gi|18591|emb|CAA42636.1|
auxin-responsive GH3 product [Glycine max]
Length = 593
Score = 216 bits (550), Expect = 2e-55
Identities = 101/126 (80%), Positives = 115/126 (91%)
Frame = -3
Query: 654 YTSYADTRTIPGHYVIYWELLTKDSANSPSHEVLDRCCLEMEESLNSVYRQCRVSDHSIG 475
YTS+ADT++IPGHYVIYWELL KDS+N+P+ E L++CCL MEESLN+VYRQ RV+DHSIG
Sbjct: 468 YTSFADTKSIPGHYVIYWELLMKDSSNAPTTEALEQCCLTMEESLNAVYRQGRVADHSIG 527
Query: 474 PLEIRVVRSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSKDLPHW 295
PLEIRVV++GTFEELMDYAISRGASI+QYKVPRCV FTPI ELLDSRV SVHFS PHW
Sbjct: 528 PLEIRVVKNGTFEELMDYAISRGASISQYKVPRCVTFTPITELLDSRVESVHFSPSEPHW 587
Query: 294 TPERKR 277
TPER+R
Sbjct: 588 TPERRR 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,486,896
Number of Sequences: 1393205
Number of extensions: 13338275
Number of successful extensions: 32433
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 30072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32032
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
