Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004149A_C01 KMC004149A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62809.1| unknown [Arabidopsis thaliana] 126 2e-28
ref|NP_568373.1| putative protein; protein id: At5g19380.1, supp... 125 3e-28
ref|NP_196778.1| putative protein; protein id: At5g12170.1 [Arab... 122 4e-27
gb|AAM60923.1| unknown [Arabidopsis thaliana] 122 4e-27
gb|AAM13018.1| unknown protein [Arabidopsis thaliana] gi|2213652... 122 4e-27
>gb|AAM62809.1| unknown [Arabidopsis thaliana]
Length = 447
Score = 126 bits (316), Expect = 2e-28
Identities = 62/120 (51%), Positives = 90/120 (74%)
Frame = -3
Query: 555 LKGIPFAQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTHLAFNISLLQVLKSSSA 376
L GIPF QLPSY++ G CFLNIG+ + C GAPLLP+++++ ++A+NISLL+++K SSA
Sbjct: 320 LWGIPFNQLPSYIRDGGACFLNIGSXITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSA 379
Query: 375 VVASLVLMLSVPVSVYILSLPLPYLPEATSLSPFFLLGCGVLVCGLYLYNTTRPARNSSE 196
VV+SL +SVP++VY +LPLPYL A++L F+ G +LV G+ LY T P+ N+S+
Sbjct: 380 VVSSLASTVSVPIAVYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWT-PSTNTSD 438
>ref|NP_568373.1| putative protein; protein id: At5g19380.1, supported by cDNA:
158575. [Arabidopsis thaliana]
Length = 447
Score = 125 bits (315), Expect = 3e-28
Identities = 62/120 (51%), Positives = 90/120 (74%)
Frame = -3
Query: 555 LKGIPFAQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTHLAFNISLLQVLKSSSA 376
L GIPF QLPSY++ G CFLNIG+ + C GAPLLP+++++ ++A+NISLL+++K SSA
Sbjct: 320 LWGIPFNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSA 379
Query: 375 VVASLVLMLSVPVSVYILSLPLPYLPEATSLSPFFLLGCGVLVCGLYLYNTTRPARNSSE 196
VV+SL +SVP++VY +LPLPYL A++L F+ G +LV G+ LY T P+ N+S+
Sbjct: 380 VVSSLASTVSVPIAVYCFTLPLPYLGVASTLPRGFVAGTIILVVGMLLYAWT-PSTNTSD 438
>ref|NP_196778.1| putative protein; protein id: At5g12170.1 [Arabidopsis thaliana]
gi|9759384|dbj|BAB10035.1|
gene_id:MXC9.13~pir||T09909~similar to unknown protein
[Arabidopsis thaliana]
Length = 276
Score = 122 bits (305), Expect = 4e-27
Identities = 62/122 (50%), Positives = 85/122 (68%)
Frame = -3
Query: 555 LKGIPFAQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTHLAFNISLLQVLKSSSA 376
L GIPF QL +YLK GA CFLN G T C GAP LPLL+++ ++ +NI+LL++LK SSA
Sbjct: 146 LWGIPFNQLGTYLKDGAVCFLNNGTITKGCDGAPFLPLLFVIMNIGYNIALLRLLKISSA 205
Query: 375 VVASLVLMLSVPVSVYILSLPLPYLPEATSLSPFFLLGCGVLVCGLYLYNTTRPARNSSE 196
VV+ L +SVP++V++ ++PLPYL A+SL F+ G +LV G+ LY+ T NSS
Sbjct: 206 VVSCLASTVSVPIAVFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSH 265
Query: 195 ID 190
D
Sbjct: 266 TD 267
>gb|AAM60923.1| unknown [Arabidopsis thaliana]
Length = 452
Score = 122 bits (305), Expect = 4e-27
Identities = 62/122 (50%), Positives = 85/122 (68%)
Frame = -3
Query: 555 LKGIPFAQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTHLAFNISLLQVLKSSSA 376
L GIPF QL +YLK GA CFLN G T C GAP LPLL+++ ++ +NI+LL++LK SSA
Sbjct: 322 LWGIPFNQLGTYLKDGAVCFLNNGTITKGCDGAPFLPLLFVIMNIGYNIALLRLLKISSA 381
Query: 375 VVASLVLMLSVPVSVYILSLPLPYLPEATSLSPFFLLGCGVLVCGLYLYNTTRPARNSSE 196
VV+ L +SVP++V++ ++PLPYL A+SL F+ G +LV G+ LY+ T NSS
Sbjct: 382 VVSCLASTVSVPIAVFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSH 441
Query: 195 ID 190
D
Sbjct: 442 TD 443
>gb|AAM13018.1| unknown protein [Arabidopsis thaliana] gi|22136522|gb|AAM91339.1|
unknown protein [Arabidopsis thaliana]
Length = 452
Score = 122 bits (305), Expect = 4e-27
Identities = 62/122 (50%), Positives = 85/122 (68%)
Frame = -3
Query: 555 LKGIPFAQLPSYLKSGAGCFLNIGADTSSCAGAPLLPLLYIVTHLAFNISLLQVLKSSSA 376
L GIPF QL +YLK GA CFLN G T C GAP LPLL+++ ++ +NI+LL++LK SSA
Sbjct: 322 LWGIPFNQLGTYLKDGAVCFLNNGTITKGCDGAPFLPLLFVIMNIGYNIALLRLLKISSA 381
Query: 375 VVASLVLMLSVPVSVYILSLPLPYLPEATSLSPFFLLGCGVLVCGLYLYNTTRPARNSSE 196
VV+ L +SVP++V++ ++PLPYL A+SL F+ G +LV G+ LY+ T NSS
Sbjct: 382 VVSCLASTVSVPIAVFLFTMPLPYLGVASSLPKGFMGGTIILVLGMILYSWTPHGANSSH 441
Query: 195 ID 190
D
Sbjct: 442 TD 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,199,063
Number of Sequences: 1393205
Number of extensions: 10299780
Number of successful extensions: 25030
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 24316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25018
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
