Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004146A_C01 KMC004146A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA89571.1| unnamed protein product [Oryza sativa (japonica ... 134 5e-31
ref|NP_565629.1| putative hydroxymethylglutaryl-CoA lyase; prote... 131 4e-30
pir||T02655 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) - Arabi... 131 4e-30
gb|AAL89669.1|AF411956_10 hydroxymethylglutaryl-CoA lyase [Takif... 115 2e-25
ref|NP_077362.1| 3-hydroxy-3-methylglutaryl CoA lyase [Rattus no... 115 3e-25
>dbj|BAA89571.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 407
Score = 134 bits (337), Expect = 5e-31
Identities = 68/92 (73%), Positives = 77/92 (82%), Gaps = 2/92 (2%)
Frame = -2
Query: 487 SNTLVSLQMGISTVDSSVSGLGXCPYAQGATGNVATEDVVYMLTGLGVKTNVDLGKLMLA 308
SN L+SLQMG+S VDSSV+GLG CPYA+GA+GNVATEDVVYML GLG+ TNVDLGK+M A
Sbjct: 316 SNILISLQMGVSVVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGISTNVDLGKVMAA 375
Query: 307 GDFICKHLGRASGSKAATA--SSKVTNHASKL 218
G+FIC HLGR SGSKAA A S T +ASKL
Sbjct: 376 GEFICNHLGRQSGSKAAIALGSKVATANASKL 407
>ref|NP_565629.1| putative hydroxymethylglutaryl-CoA lyase; protein id: At2g26800.1,
supported by cDNA: gi_11935188, supported by cDNA:
gi_13194811 [Arabidopsis thaliana]
gi|11935189|gb|AAG42010.1|AF327420_1 putative
hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]
gi|13194812|gb|AAK15568.1|AF349521_1 putative
hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]
gi|20197286|gb|AAC32247.2| putative
hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]
Length = 468
Score = 131 bits (330), Expect = 4e-30
Identities = 67/91 (73%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Frame = -2
Query: 487 SNTLVSLQMGISTVDSSVSGLGXCPYAQGATGNVATEDVVYMLTGLGVKTNVDLGKLMLA 308
+N LVSLQMGIS VDSS++GLG CPYA+GA+GNVATEDVVYML GLGV TNVDLGKL+ A
Sbjct: 378 ANILVSLQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAA 437
Query: 307 GDFICKHLGRASGSKAATA-SSKVTNHASKL 218
GDFI KHLGR +GSKAA A + ++T ASK+
Sbjct: 438 GDFISKHLGRPNGSKAAVALNRRITADASKI 468
>pir||T02655 hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) - Arabidopsis thaliana
gi|22136060|gb|AAM91612.1| putative
hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]
gi|23197746|gb|AAN15400.1| putative
hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]
Length = 433
Score = 131 bits (330), Expect = 4e-30
Identities = 67/91 (73%), Positives = 78/91 (85%), Gaps = 1/91 (1%)
Frame = -2
Query: 487 SNTLVSLQMGISTVDSSVSGLGXCPYAQGATGNVATEDVVYMLTGLGVKTNVDLGKLMLA 308
+N LVSLQMGIS VDSS++GLG CPYA+GA+GNVATEDVVYML GLGV TNVDLGKL+ A
Sbjct: 343 ANILVSLQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAA 402
Query: 307 GDFICKHLGRASGSKAATA-SSKVTNHASKL 218
GDFI KHLGR +GSKAA A + ++T ASK+
Sbjct: 403 GDFISKHLGRPNGSKAAVALNRRITADASKI 433
>gb|AAL89669.1|AF411956_10 hydroxymethylglutaryl-CoA lyase [Takifugu rubripes]
Length = 325
Score = 115 bits (289), Expect = 2e-25
Identities = 57/83 (68%), Positives = 68/83 (81%)
Frame = -2
Query: 487 SNTLVSLQMGISTVDSSVSGLGXCPYAQGATGNVATEDVVYMLTGLGVKTNVDLGKLMLA 308
+N LV+LQMG+S VDSSV+GLG CPYAQGA+GNVATEDVVYML GLG++T VDL K+M A
Sbjct: 243 ANILVALQMGVSVVDSSVAGLGGCPYAQGASGNVATEDVVYMLHGLGIQTGVDLSKVMDA 302
Query: 307 GDFICKHLGRASGSKAATASSKV 239
G FIC+ L R S SK A A+ K+
Sbjct: 303 GAFICRSLNRKSNSKVAQATCKL 325
>ref|NP_077362.1| 3-hydroxy-3-methylglutaryl CoA lyase [Rattus norvegicus]
gi|2495261|sp|P97519|HMGL_RAT HYDROXYMETHYLGLUTARYL-COA
LYASE, MITOCHONDRIAL PRECURSOR (HMG-COA LYASE) (HL)
(3-HYDROXY-3-METHYLGLUTARATE-COA LYASE)
gi|1743378|emb|CAA71148.1| 3-hydroxy-3-methylglutaryl
CoA lyase [Rattus norvegicus]
Length = 325
Score = 115 bits (287), Expect = 3e-25
Identities = 55/83 (66%), Positives = 70/83 (84%)
Frame = -2
Query: 487 SNTLVSLQMGISTVDSSVSGLGXCPYAQGATGNVATEDVVYMLTGLGVKTNVDLGKLMLA 308
+NTLV+LQMG+S VDSSV+GLG CPYA+GA+GN+ATED+VYMLTGLG+ T V+L KL+ A
Sbjct: 243 ANTLVALQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEA 302
Query: 307 GDFICKHLGRASGSKAATASSKV 239
GDFIC+ L R + SK A A+ K+
Sbjct: 303 GDFICQALNRKTSSKVAQATCKL 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,915,575
Number of Sequences: 1393205
Number of extensions: 9587019
Number of successful extensions: 23353
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 22216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23314
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
