Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004145A_C01 KMC004145A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704171.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.1
gb|EAA22187.1| transportin-related [Plasmodium yoelii yoelii] 32 7.0
ref|XP_146060.1| similar to hypothetical protein FLJ13081 [Mus m... 32 7.0
ref|NP_736947.1| 5'-nucleotidase [Corynebacterium efficiens YS-3... 32 7.0
ref|NP_666067.1| cDNA sequence BC025641; hypothetical protein MG... 32 7.0
>ref|NP_704171.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498909|emb|CAD50987.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1605
Score = 32.3 bits (72), Expect = 4.1
Identities = 11/37 (29%), Positives = 22/37 (58%)
Frame = -2
Query: 129 FLFSLSSSNDTLMQARHIHPIVLSFLITFILYYINYF 19
F F S NDTL + +++ +++ + +I YY+ Y+
Sbjct: 462 FFFKTSEKNDTLFKIQNVFILIIYIKLFYIYYYLKYY 498
>gb|EAA22187.1| transportin-related [Plasmodium yoelii yoelii]
Length = 1155
Score = 31.6 bits (70), Expect = 7.0
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -1
Query: 337 GLHRSSYKIQGGDSTLC**LALLKFMANRLLPFILFLCLEPNFPISNCTVYVFGGIYLHI 158
G+ +S++ + G S C L+ F+ N ++PF++ P+ P+SN + G I +HI
Sbjct: 939 GILQSNFALIGDISRFCA-QYLIPFL-NDIIPFLIAHISHPSIPVSNNASWAIGEISIHI 996
Query: 157 Q*Q 149
Q
Sbjct: 997 NSQ 999
>ref|XP_146060.1| similar to hypothetical protein FLJ13081 [Mus musculus]
Length = 491
Score = 31.6 bits (70), Expect = 7.0
Identities = 24/83 (28%), Positives = 37/83 (43%)
Frame = +3
Query: 279 SHQQRVESPP*IL*ELL*RPISYTMHHL*QHEPLLPPCLNCSPMRECSHLTSSNKNGTNC 458
+ +QRV SPP L + ++ + H+ PLLP CLN R C +++
Sbjct: 310 AEEQRVHSPPASLVPRIHVILAQKLQHI---NPLLPTCLNKEESRSCQFVSN-------- 358
Query: 459 SSRIFIKGVQHVMAEKNGSLTRS 527
F+ + V AE G LT +
Sbjct: 359 ----FMSELSPVRAELLGFLTHA 377
>ref|NP_736947.1| 5'-nucleotidase [Corynebacterium efficiens YS-314]
gi|23492173|dbj|BAC17147.1| 5'-nucleotidase
[Corynebacterium efficiens YS-314]
Length = 684
Score = 31.6 bits (70), Expect = 7.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 257 SHEFQKGQSSTKGRVATLNFVRTSVKTYFLYYAPSIAA*TPSPSLSQLLTYEGMLTSY 430
+HEF +G S GRV+ V + + F Y ++ P+P+ S+++ +G+ Y
Sbjct: 115 NHEFDRGYSDLTGRVS----VDGTGEAQFPYLGANVVGGVPAPAGSEIMDLDGVKVGY 168
>ref|NP_666067.1| cDNA sequence BC025641; hypothetical protein MGC36596 [Mus
musculus] gi|19343665|gb|AAH25641.1| Similar to
hypothetical protein FLJ13081 [Mus musculus]
gi|23468364|gb|AAH38342.1| hypothetical protein MGC36596
[Mus musculus]
Length = 642
Score = 31.6 bits (70), Expect = 7.0
Identities = 24/83 (28%), Positives = 37/83 (43%)
Frame = +3
Query: 279 SHQQRVESPP*IL*ELL*RPISYTMHHL*QHEPLLPPCLNCSPMRECSHLTSSNKNGTNC 458
+ +QRV SPP L + ++ + H+ PLLP CLN R C +++
Sbjct: 291 AEEQRVHSPPASLVPRIHVILAQKLQHI---NPLLPTCLNKEESRSCQFVSN-------- 339
Query: 459 SSRIFIKGVQHVMAEKNGSLTRS 527
F+ + V AE G LT +
Sbjct: 340 ----FMSELSPVRAELLGFLTHA 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,825,277
Number of Sequences: 1393205
Number of extensions: 10189074
Number of successful extensions: 23726
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23715
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
