Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004143A_C01 KMC004143A_c01
(419 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA62273.1| ORF2 34 0.37
emb|CAD12046.1| glycerol transporter subunit C [Mycoplasma sp. '... 34 0.49
gb|EAA13621.1| agCP7645 [Anopheles gambiae str. PEST] 33 0.63
gb|AAF24204.1|AF165135_4 hypothetical ABC transporter protein [M... 33 0.83
ref|NP_219435.1| sodium/proton-dependent alanine transporter [Tr... 31 3.1
>gb|AAA62273.1| ORF2
Length = 141
Score = 34.3 bits (77), Expect = 0.37
Identities = 15/61 (24%), Positives = 29/61 (46%)
Frame = -1
Query: 191 VCLF*CCFHFLLFILSFSLCKLACVFKRFYNCWK*FVRYMLWSHVIYMFLIHYIVNISFR 12
+C CCF+ + + C + C F ++ C ++ W V+++FL + V + F
Sbjct: 82 LCFLYCCFYLVCLVFFCIFCCVLCYFLIYFLCC-----FLFW--VVFLFLFFFFVYVCFY 134
Query: 11 L 9
L
Sbjct: 135 L 135
>emb|CAD12046.1| glycerol transporter subunit C [Mycoplasma sp. 'bovine group 7']
Length = 267
Score = 33.9 bits (76), Expect = 0.49
Identities = 21/74 (28%), Positives = 40/74 (53%), Gaps = 5/74 (6%)
Frame = -3
Query: 222 IIKMLKLVLYCVSLLMLLPFSPFY---FIFFFMQISLC--IQTIL*LLEVICALHVMVTC 58
I+ +++++Y ++++ LL P Y F++FF+ ISL L L V+ +++ T
Sbjct: 79 ILISIRIIVYTLAIIGLLKMKPVYQKVFLYFFIIISLIPEFSIFLSLKTVLLQINLYTTP 138
Query: 57 NLYVFNPLHSQYQF 16
YV N + S + F
Sbjct: 139 IAYVTNAIFSFFNF 152
>gb|EAA13621.1| agCP7645 [Anopheles gambiae str. PEST]
Length = 1187
Score = 33.5 bits (75), Expect = 0.63
Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 11/66 (16%)
Frame = +3
Query: 246 NYPSHI-----NFTKSSGSKVA----TMNNMFSL--LFFTLPLPTPTESSPAKRFNGGGG 392
N+PS+I N T +S + A T +++ + L T+ PT ++SPA R GGGG
Sbjct: 1002 NFPSNISSSSNNSTNNSAAAAAALLLTASSLIASTSLITTIAQPTSQQTSPAGRGRGGGG 1061
Query: 393 GLFGSS 410
G SS
Sbjct: 1062 GSMDSS 1067
>gb|AAF24204.1|AF165135_4 hypothetical ABC transporter protein [Mycoplasma mycoides subsp.
mycoides SC] gi|11934746|gb|AAG41806.1|AF251037_3
glycerol transporter subunit C [Mycoplasma mycoides
subsp. mycoides SC]
Length = 269
Score = 33.1 bits (74), Expect = 0.83
Identities = 19/74 (25%), Positives = 40/74 (53%), Gaps = 5/74 (6%)
Frame = -3
Query: 222 IIKMLKLVLYCVSLLMLLPFSPFY---FIFFFMQISLC--IQTIL*LLEVICALHVMVTC 58
++ L++++Y ++++ LL P Y F++FF+ ISL L L ++ +H+ T
Sbjct: 79 VLISLRIIIYSLAIIGLLKMKPNYQKVFLYFFIIISLIPEFSIFLSLKTILLQIHLEETP 138
Query: 57 NLYVFNPLHSQYQF 16
++ N + S + F
Sbjct: 139 IAFISNAIFSFFNF 152
>ref|NP_219435.1| sodium/proton-dependent alanine transporter [Treponema pallidum]
gi|7443822|pir||G71255 probable sodium/proton-dependent
alanine transporter - syphilis spirochete
gi|3323324|gb|AAC26586.1| sodium/proton-dependent
alanine transporter [Treponema pallidum]
Length = 500
Score = 31.2 bits (69), Expect = 3.1
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = -3
Query: 267 NLYEKDSFVSFVK--KIIIKMLKLVLYCVSLLMLLPFSPFYFIFFFMQISLCIQTIL*LL 94
N Y +S V F+K K+++ + ++ CVS + + + F+F++ + + T++ L+
Sbjct: 400 NYYYAESNVRFIKDHKMVLSVFRVT--CVSAVFVGAHASFHFVWGVADLFMVFMTVINLI 457
Query: 93 EVICALHVMVTCNLYVFNPLHSQYQ 19
++ LH + LY+ QY+
Sbjct: 458 AIV-TLHPVA---LYLLRDYRKQYR 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,697,484
Number of Sequences: 1393205
Number of extensions: 6792399
Number of successful extensions: 26550
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 23744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26213
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
