Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004141A_C01 KMC004141A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62495.1| protein kinase [Arabidopsis thaliana] 68 5e-11
ref|NP_199811.1| protein kinase; protein id: At5g50000.1, suppor... 68 5e-11
ref|NP_186798.1| putative protein kinase; protein id: At3g01490.... 68 6e-11
gb|AAO72572.1| putative protein kinase [Oryza sativa (japonica c... 64 7e-10
dbj|BAB92793.1| protein kinase -like [Oryza sativa (japonica cul... 59 2e-08
>gb|AAM62495.1| protein kinase [Arabidopsis thaliana]
Length = 385
Score = 68.2 bits (165), Expect = 5e-11
Identities = 32/52 (61%), Positives = 36/52 (68%)
Frame = -3
Query: 491 MKKCWDATPDKRPEIGRGSFHDGRPLTHPKGGGMIPFDQQQGCLCFRKHRGP 336
MK+CWDA PDKRPE+ + KGGGMIP DQQQGCLCFR+ RGP
Sbjct: 335 MKRCWDANPDKRPEMDE-VVPMLESIDTTKGGGMIPNDQQQGCLCFRRKRGP 385
>ref|NP_199811.1| protein kinase; protein id: At5g50000.1, supported by cDNA: 142106.
[Arabidopsis thaliana] gi|10177211|dbj|BAB10286.1|
protein kinase [Arabidopsis thaliana]
Length = 385
Score = 68.2 bits (165), Expect = 5e-11
Identities = 32/52 (61%), Positives = 36/52 (68%)
Frame = -3
Query: 491 MKKCWDATPDKRPEIGRGSFHDGRPLTHPKGGGMIPFDQQQGCLCFRKHRGP 336
MK+CWDA PDKRPE+ + KGGGMIP DQQQGCLCFR+ RGP
Sbjct: 335 MKRCWDANPDKRPEMDE-VVPMLESIDTTKGGGMIPNDQQQGCLCFRRKRGP 385
>ref|NP_186798.1| putative protein kinase; protein id: At3g01490.1, supported by
cDNA: gi_16323086 [Arabidopsis thaliana]
gi|6016708|gb|AAF01534.1|AC009325_4 putative protein
kinase [Arabidopsis thaliana] gi|16323087|gb|AAL15278.1|
AT3g01490/F4P13_4 [Arabidopsis thaliana]
gi|22531108|gb|AAM97058.1| putative protein kinase
[Arabidopsis thaliana] gi|23197996|gb|AAN15525.1|
putative protein kinase [Arabidopsis thaliana]
Length = 411
Score = 67.8 bits (164), Expect = 6e-11
Identities = 31/52 (59%), Positives = 36/52 (68%)
Frame = -3
Query: 491 MKKCWDATPDKRPEIGRGSFHDGRPLTHPKGGGMIPFDQQQGCLCFRKHRGP 336
MK+CWDA P+KRPE+ + KGGGMIP DQQQGC CFR+HRGP
Sbjct: 361 MKRCWDANPEKRPEMEE-VVAMLEAIDTSKGGGMIPPDQQQGCFCFRRHRGP 411
>gb|AAO72572.1| putative protein kinase [Oryza sativa (japonica cultivar-group)]
Length = 382
Score = 64.3 bits (155), Expect = 7e-10
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = -3
Query: 491 MKKCWDATPDKRPEIGRGSFHDGRPLTHPKGGGMIPFDQQQGCL-CFRKHRGP 336
MK+CWDA PDKRPE+ + KGGGMIP DQ+QGCL CFR++RGP
Sbjct: 331 MKRCWDANPDKRPEMAE-VVSMLEAIDTSKGGGMIPVDQRQGCLSCFRQYRGP 382
>dbj|BAB92793.1| protein kinase -like [Oryza sativa (japonica cultivar-group)]
Length = 388
Score = 59.3 bits (142), Expect = 2e-08
Identities = 29/53 (54%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = -3
Query: 491 MKKCWDATPDKRPEIGRGSFHDGRPLTHPKGGGMIPFDQQQGCL-CFRKHRGP 336
MK+CWDA PDKRP + + KGGGMIP DQ QGC CF +HRGP
Sbjct: 337 MKRCWDANPDKRPAMAE-VVSMLEAIDTSKGGGMIPTDQPQGCFSCFGRHRGP 388
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,347,704
Number of Sequences: 1393205
Number of extensions: 10346434
Number of successful extensions: 30540
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30521
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
