Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004140A_C01 KMC004140A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62979.1| unknown [Arabidopsis thaliana] 60 4e-08
ref|NP_190563.1| putative protein; protein id: At3g49940.1, supp... 60 4e-08
gb|AAM64844.1| unknown [Arabidopsis thaliana] 59 9e-08
ref|NP_195470.1| putative protein; protein id: At4g37540.1, supp... 58 1e-07
gb|AAM65544.1| unknown [Arabidopsis thaliana] 57 2e-07
>gb|AAM62979.1| unknown [Arabidopsis thaliana]
Length = 247
Score = 59.7 bits (143), Expect = 4e-08
Identities = 49/142 (34%), Positives = 71/142 (49%), Gaps = 11/142 (7%)
Frame = -3
Query: 700 AAVETVLRGGTLKPLPELLGLDAPSHVPT-AADDASEGEVTYDTWRIRDPNPNARL---- 536
AAVETVLRGG+LKP+PELL + P+ +D+ASE R D + + +
Sbjct: 96 AAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDQNIYHHC 155
Query: 535 ------TNSRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNVSSYGCKREARRPGSPSM 374
+ SRS+A +R ++ Q +++L+L L P Y K + +PSM
Sbjct: 156 RFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIP-------IYPIKTLPFKEDTPSM 208
Query: 373 NSEESVTTTACLGSGIGDHCSR 308
SEESVTT + + GD R
Sbjct: 209 YSEESVTTVSFQNNNAGDRYVR 230
>ref|NP_190563.1| putative protein; protein id: At3g49940.1, supported by cDNA:
17840. [Arabidopsis thaliana] gi|11282418|pir||T45847
hypothetical protein F3A4.20 - Arabidopsis thaliana
gi|6522915|emb|CAB62102.1| putative protein [Arabidopsis
thaliana] gi|27311687|gb|AAO00809.1| putative protein
[Arabidopsis thaliana]
Length = 247
Score = 59.7 bits (143), Expect = 4e-08
Identities = 49/142 (34%), Positives = 71/142 (49%), Gaps = 11/142 (7%)
Frame = -3
Query: 700 AAVETVLRGGTLKPLPELLGLDAPSHVPT-AADDASEGEVTYDTWRIRDPNPNARL---- 536
AAVETVLRGG+LKP+PELL + P+ +D+ASE R D + + +
Sbjct: 96 AAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHC 155
Query: 535 ------TNSRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNVSSYGCKREARRPGSPSM 374
+ SRS+A +R ++ Q +++L+L L P Y K + +PSM
Sbjct: 156 RFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIP-------IYPIKTLPFKEDTPSM 208
Query: 373 NSEESVTTTACLGSGIGDHCSR 308
SEESVTT + + GD R
Sbjct: 209 YSEESVTTVSFQNNNAGDRYVR 230
>gb|AAM64844.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 58.5 bits (140), Expect = 9e-08
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Frame = -3
Query: 700 AAVETVLRGGTLKPLPELLGLDAPSHVPTAADDASEGEVTYDTWR---IRDPNPNARLTN 530
AAVETVLRGGTL+P+ +L L++PS + ++D++SE W R+ + R +
Sbjct: 96 AAVETVLRGGTLRPISDL--LESPS-LMISSDESSE------IWHQDVSRNQTHHCRFST 146
Query: 529 SRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNV----------SSYGCKREARRPGSP 380
SRS+ + +L++ +DL+L++ G SS+ + RPGSP
Sbjct: 147 SRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSP 206
Query: 379 SMNSEESVTTTACLGSGIGDHCSRDE--DRKVLKLFV 275
SEESVTT+ GD+ + ++K+L LFV
Sbjct: 207 ---SEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240
>ref|NP_195470.1| putative protein; protein id: At4g37540.1, supported by cDNA:
33704., supported by cDNA: gi_18176002 [Arabidopsis
thaliana] gi|7485774|pir||T04711 hypothetical protein
F19F18.30 - Arabidopsis thaliana
gi|4468979|emb|CAB38293.1| putative protein [Arabidopsis
thaliana] gi|7270736|emb|CAB80419.1| putative protein
[Arabidopsis thaliana] gi|18176003|gb|AAL59966.1|
unknown protein [Arabidopsis thaliana]
gi|21689897|gb|AAM67509.1| unknown protein [Arabidopsis
thaliana]
Length = 240
Score = 58.2 bits (139), Expect = 1e-07
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 15/157 (9%)
Frame = -3
Query: 700 AAVETVLRGGTLKPLPELLGLDAPSHVPTAADDASEGEVTYDTWR---IRDPNPNARLTN 530
AAVETVLRGGTL+P+ +L L++PS + + D++SE W R+ + R +
Sbjct: 96 AAVETVLRGGTLRPISDL--LESPS-LMISCDESSE------IWHQDVSRNQTHHCRFST 146
Query: 529 SRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNV----------SSYGCKREARRPGSP 380
SRS+ + +L++ +DL+L++ G SS+ + RPGSP
Sbjct: 147 SRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSP 206
Query: 379 SMNSEESVTTTACLGSGIGDHCSRDE--DRKVLKLFV 275
SEESVTT+ GD+ + ++K+L LFV
Sbjct: 207 ---SEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240
>gb|AAM65544.1| unknown [Arabidopsis thaliana]
Length = 250
Score = 57.4 bits (137), Expect = 2e-07
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Frame = -3
Query: 700 AAVETVLRGGTLKPLPELL-------GLDAPSHVPTA----------ADDASEGEVTYDT 572
AAVETVLRGG+L+P+PELL G +P+ ++ +D+++ + + +
Sbjct: 96 AAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEESSEICTEMLNLQQNDSTDRNIYHHS 155
Query: 571 WRIRDPNPNARLTNSRSSAGKRQRPEELAKLQTTTDLNLRLTPGFLQNVSSYGCKREARR 392
R + +R T SS KR+R ++ Q +++L+L L P F ++ R RR
Sbjct: 156 ---RFSSSRSRSTMDSSSPTKRKRLS--SEDQPSSELDLSLIPNFPIKQATPSSTR--RR 208
Query: 391 PGSPSMNSEES---VTTTACLGSGIGDHCSRDEDRKVLKLFV 275
+PSMNSE+S TTTA G E K+L LFV
Sbjct: 209 SVTPSMNSEDSGTTTTTTAFCDKGDVYGNGGGETTKLLNLFV 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,731,890
Number of Sequences: 1393205
Number of extensions: 13974391
Number of successful extensions: 60018
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 52421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58707
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
