Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004136A_C01 KMC004136A_c01
(386 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172295.1| histone H2B, putative; protein id: At1g08170.1 ... 33 1.1
gb|ZP_00002665.1| hypothetical protein [Nitrosomonas europaea] 31 4.3
ref|NP_176808.2| ethylene-response protein, ETR1; protein id: At... 30 5.7
ref|XP_282980.1| RIKEN cDNA C130052G03 gene [Mus musculus] 30 7.4
dbj|BAC39389.1| unnamed protein product [Mus musculus] 30 7.4
>ref|NP_172295.1| histone H2B, putative; protein id: At1g08170.1 [Arabidopsis
thaliana] gi|6579213|gb|AAF18256.1|AC011438_18 T23G18.3
[Arabidopsis thaliana]
gi|8778831|gb|AAF79830.1|AC026875_10 T6D22.26
[Arabidopsis thaliana]
Length = 243
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = -1
Query: 383 PPDTRKSKEPGSKEKTDPVEKKRVHKGSVKSE 288
PP+T SK G+ +KTD VEKK+ +K K +
Sbjct: 110 PPETPASKSEGTLKKTDKVEKKQENKKKKKKK 141
>gb|ZP_00002665.1| hypothetical protein [Nitrosomonas europaea]
Length = 149
Score = 30.8 bits (68), Expect = 4.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 295 FTLPLWTLFFSTGSVFSLDPGSLD 366
F L LW +FF TG F+L+ GS +
Sbjct: 33 FQLTLWEIFFETGPTFNLNNGSFE 56
>ref|NP_176808.2| ethylene-response protein, ETR1; protein id: At1g66340.1
[Arabidopsis thaliana]
Length = 1323
Score = 30.4 bits (67), Expect = 5.7
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = +3
Query: 111 IVSMSACLHQSIHSFILFSL*MNPNPRLRSK*IVGYQQSAIQS 239
+VS S + IH F FS NPNP + + ++ Y ++QS
Sbjct: 796 LVSQSTRSPKLIHGFFSFSSKTNPNPNKQQQILIDYISKSLQS 838
>ref|XP_282980.1| RIKEN cDNA C130052G03 gene [Mus musculus]
Length = 814
Score = 30.0 bits (66), Expect = 7.4
Identities = 19/39 (48%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Frame = -1
Query: 383 PPDTRKS--KEPGSKEKTDPVEKKRVHKGSVKSENVPRN 273
PPDT K+ K+P K+K DP EK VH+G SE + N
Sbjct: 408 PPDTLKNGFKKPLEKQK-DPSEKS-VHEGDSSSEKIIEN 444
>dbj|BAC39389.1| unnamed protein product [Mus musculus]
Length = 761
Score = 30.0 bits (66), Expect = 7.4
Identities = 19/39 (48%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Frame = -1
Query: 383 PPDTRKS--KEPGSKEKTDPVEKKRVHKGSVKSENVPRN 273
PPDT K+ K+P K+K DP EK VH+G SE + N
Sbjct: 408 PPDTLKNGFKKPLEKQK-DPSEKS-VHEGDSSSEKIIEN 444
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,280,946
Number of Sequences: 1393205
Number of extensions: 6071791
Number of successful extensions: 10992
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10986
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
