Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004134A_C01 KMC004134A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44377.1| GDP-Fuc:Gal-beta-1,3GlcNAc-R alpha1,4-fucosyltra... 64 4e-10
ref|NP_177344.1| hypothetical protein; protein id: At1g71990.1, ... 61 4e-09
sp|Q9C8W3|FU13_ARATH Alpha-(1,4)-fucosyltransferase (FT4-M) (Gal... 61 4e-09
emb|CAC85740.1| alpha-1,4-fucosyltransferase [Lycopersicon escul... 59 2e-08
emb|CAC95147.1| alpha (1,3/1,4) fucosyltransferase [Medicago tru... 40 0.005
>emb|CAC44377.1| GDP-Fuc:Gal-beta-1,3GlcNAc-R alpha1,4-fucosyltransferase [Beta
vulgaris]
Length = 405
Score = 63.9 bits (154), Expect = 4e-10
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = -2
Query: 432 LGNYGKTRAMSLDTLPCRLCEAVSRKGGRNARS 334
LGNYGKTRA S+DTLPCRLCEAVSR+GGR+AR+
Sbjct: 372 LGNYGKTRATSIDTLPCRLCEAVSRRGGRSARA 404
>ref|NP_177344.1| hypothetical protein; protein id: At1g71990.1, supported by cDNA:
gi_19067864 [Arabidopsis thaliana]
gi|25406133|pir||H96742 hypothetical protein F17M19.14
[imported] - Arabidopsis thaliana
gi|12324536|gb|AAG52222.1|AC021665_5 hypothetical
protein; 72707-74435 [Arabidopsis thaliana]
gi|19067865|gb|AAK11728.1| alpha 1,4 fucosyltransferase
[Arabidopsis thaliana]
Length = 393
Score = 60.8 bits (146), Expect = 4e-09
Identities = 25/31 (80%), Positives = 30/31 (96%)
Frame = -2
Query: 432 LGNYGKTRAMSLDTLPCRLCEAVSRKGGRNA 340
+GNYGKTRA+SLDTLPCRLCE +SR+GG+NA
Sbjct: 361 MGNYGKTRAVSLDTLPCRLCEEISRRGGKNA 391
>sp|Q9C8W3|FU13_ARATH Alpha-(1,4)-fucosyltransferase (FT4-M) (Galactoside
3(4)-L-fucosyltransferase) (FucTC) (AtFUT13)
gi|13992486|emb|CAC38049.1| alpha1,3-fucosyltransferase
homologue [Arabidopsis thaliana]
Length = 401
Score = 60.8 bits (146), Expect = 4e-09
Identities = 25/31 (80%), Positives = 30/31 (96%)
Frame = -2
Query: 432 LGNYGKTRAMSLDTLPCRLCEAVSRKGGRNA 340
+GNYGKTRA+SLDTLPCRLCE +SR+GG+NA
Sbjct: 369 MGNYGKTRAVSLDTLPCRLCEEISRRGGKNA 399
>emb|CAC85740.1| alpha-1,4-fucosyltransferase [Lycopersicon esculentum]
Length = 413
Score = 58.5 bits (140), Expect = 2e-08
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2
Query: 432 LGNYGKTRAMSLDTLPCRLCEAVSRKGGRNARS 334
LGNY KTRA SLDTLPCRLCEA+S++ GRNA++
Sbjct: 380 LGNYRKTRAASLDTLPCRLCEAISKRNGRNAKA 412
>emb|CAC95147.1| alpha (1,3/1,4) fucosyltransferase [Medicago truncatula]
Length = 268
Score = 40.4 bits (93), Expect = 0.005
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 432 LGNYGKTRAMSLDTLPCRL 376
+GNY KTRAMSLDTLPCRL
Sbjct: 250 MGNYAKTRAMSLDTLPCRL 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,797,413
Number of Sequences: 1393205
Number of extensions: 5598899
Number of successful extensions: 14195
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14141
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
