Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004133A_C01 KMC004133A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica ... 182 3e-45
pir||T01657 hypothetical protein 28L9 - maize (fragment) gi|3264... 181 8e-45
ref|NP_200148.2| developmental protein SINA (seven in absentia);... 174 1e-42
dbj|BAB09798.1| developmental protein SINA (seven in absentia) [... 174 1e-42
gb|AAM11573.1|AF480944_1 ring finger E3 ligase SINAT5 [Arabidops... 172 2e-42
>dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 381
Score = 182 bits (462), Expect = 3e-45
Identities = 86/92 (93%), Positives = 89/92 (96%)
Frame = -2
Query: 602 RFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 423
RFMGDENEARNYSYSLEVGANGRK++WEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG
Sbjct: 291 RFMGDENEARNYSYSLEVGANGRKMVWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 350
Query: 422 GDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 327
GDRKELKLR+TGRIWKEQQ PD G CIPNLCS
Sbjct: 351 GDRKELKLRITGRIWKEQQTPD-GACIPNLCS 381
>pir||T01657 hypothetical protein 28L9 - maize (fragment)
gi|3264611|gb|AAC24576.1| seven in absentia homolog [Zea
mays]
Length = 113
Score = 181 bits (458), Expect = 8e-45
Identities = 83/89 (93%), Positives = 88/89 (98%)
Frame = -2
Query: 602 RFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 423
RFMGDEN+ARNYSYSLEVGANGRK+IWEGTPRS+RDSHRKVRDSHDGLIIQRNMALFFSG
Sbjct: 25 RFMGDENDARNYSYSLEVGANGRKMIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSG 84
Query: 422 GDRKELKLRVTGRIWKEQQNPDAGVCIPN 336
G+RKELKLRVTGRIWKEQQNPD+G CIPN
Sbjct: 85 GERKELKLRVTGRIWKEQQNPDSGACIPN 113
>ref|NP_200148.2| developmental protein SINA (seven in absentia); protein id:
At5g53360.1, supported by cDNA: gi_20136189 [Arabidopsis
thaliana] gi|26449935|dbj|BAC42088.1| putative ring
finger E3 ligase SINAT5 [Arabidopsis thaliana]
gi|28973205|gb|AAO63927.1| putative developmental
protein SINA (seven in absentia) [Arabidopsis thaliana]
Length = 233
Score = 174 bits (440), Expect = 1e-42
Identities = 80/92 (86%), Positives = 88/92 (94%)
Frame = -2
Query: 602 RFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 423
RFMGDE++ARNY+YSLEVG +GRK WEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG
Sbjct: 141 RFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 200
Query: 422 GDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 327
GD+KELKLRVTGRIWKEQQNPD+GVCI ++CS
Sbjct: 201 GDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 232
>dbj|BAB09798.1| developmental protein SINA (seven in absentia) [Arabidopsis
thaliana]
Length = 263
Score = 174 bits (440), Expect = 1e-42
Identities = 80/92 (86%), Positives = 88/92 (94%)
Frame = -2
Query: 602 RFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 423
RFMGDE++ARNY+YSLEVG +GRK WEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG
Sbjct: 171 RFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 230
Query: 422 GDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 327
GD+KELKLRVTGRIWKEQQNPD+GVCI ++CS
Sbjct: 231 GDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 262
>gb|AAM11573.1|AF480944_1 ring finger E3 ligase SINAT5 [Arabidopsis thaliana]
Length = 309
Score = 172 bits (437), Expect = 2e-42
Identities = 79/92 (85%), Positives = 88/92 (94%)
Frame = -2
Query: 602 RFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSG 423
RFMGDE++ARNY+YSLEVG +GRK WEGTPRSVRDSHRKVRDSHDGLIIQ+NMALFFSG
Sbjct: 217 RFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQKNMALFFSG 276
Query: 422 GDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 327
GD+KELKLRVTGRIWKEQQNPD+GVCI ++CS
Sbjct: 277 GDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,654,818
Number of Sequences: 1393205
Number of extensions: 12544111
Number of successful extensions: 34752
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 33544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34738
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
