Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004132A_C01 KMC004132A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192822.1| putative protein; protein id: At4g10840.1, supp... 160 1e-38
gb|AAM63491.1| putative kinesin light chain [Arabidopsis thaliana] 160 1e-38
gb|AAN64318.1| kinesin light chain I2I isoform; I-2Int3 [Lycoper... 131 6e-30
gb|AAL87157.1|AF480496_11 putative kinesin light chain gene [Ory... 129 3e-29
gb|AAM13438.1|AF474071_1 similar to A. thaliana protein BAB01483... 128 4e-29
>ref|NP_192822.1| putative protein; protein id: At4g10840.1, supported by cDNA:
2538., supported by cDNA: gi_18176147, supported by
cDNA: gi_19699308 [Arabidopsis thaliana]
gi|7486710|pir||T01892 hypothetical protein F8M12.21 -
Arabidopsis thaliana gi|3513727|gb|AAC33943.1| contains
similarity to TPR domains (Pfam: TPR.hmm: score: 11.15)
and kinesin motor domains (Pfam: kinesin2.hmm, score:
17.49, 20.52 and 10.94) [Arabidopsis thaliana]
gi|4539358|emb|CAB40052.1| putative protein [Arabidopsis
thaliana] gi|7267782|emb|CAB81185.1| putative protein
[Arabidopsis thaliana] gi|18176148|gb|AAL59992.1|
unknown protein [Arabidopsis thaliana]
gi|19699309|gb|AAL91265.1| AT4g10840/F25I24_50
[Arabidopsis thaliana] gi|24030472|gb|AAN41387.1|
unknown protein [Arabidopsis thaliana]
Length = 609
Score = 160 bits (405), Expect = 1e-38
Identities = 79/100 (79%), Positives = 90/100 (90%), Gaps = 1/100 (1%)
Frame = -3
Query: 555 GPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELL 376
GPC QDTLGVYSNLAATYDAMGR+ DAIEILE VLKLREEKLG ANPDFEDEK+RLAELL
Sbjct: 509 GPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAELL 568
Query: 375 KEAGKTRDRKAKSLENLIDPNSKRTKKEGN-KRWPGLGFR 259
KEAG++R+ KAKSL+NLIDPN++ KKE + K+WP LGF+
Sbjct: 569 KEAGRSRNYKAKSLQNLIDPNARPPKKESSAKKWPSLGFK 608
>gb|AAM63491.1| putative kinesin light chain [Arabidopsis thaliana]
Length = 606
Score = 160 bits (405), Expect = 1e-38
Identities = 79/100 (79%), Positives = 90/100 (90%), Gaps = 1/100 (1%)
Frame = -3
Query: 555 GPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELL 376
GPC QDTLGVYSNLAATYDAMGR+ DAIEILE VLKLREEKLG ANPDFEDEK+RLAELL
Sbjct: 506 GPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREEKLGTANPDFEDEKKRLAELL 565
Query: 375 KEAGKTRDRKAKSLENLIDPNSKRTKKEGN-KRWPGLGFR 259
KEAG++R+ KAKSL+NLIDPN++ KKE + K+WP LGF+
Sbjct: 566 KEAGRSRNYKAKSLQNLIDPNARPPKKESSAKKWPSLGFK 605
>gb|AAN64318.1| kinesin light chain I2I isoform; I-2Int3 [Lycopersicon esculentum]
Length = 89
Score = 131 bits (329), Expect = 6e-30
Identities = 66/88 (75%), Positives = 75/88 (85%), Gaps = 2/88 (2%)
Frame = -3
Query: 516 LAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKS 337
LAATYDA+GRV DAIEILEYVLKLREEKLG ANPDF DEK+RLAELLKEAG++R++ S
Sbjct: 1 LAATYDAIGRVDDAIEILEYVLKLREEKLGTANPDFNDEKKRLAELLKEAGRSRNKNPNS 60
Query: 336 LENLIDPNSKRT--KKEGNKRWPGLGFR 259
LENLIDPNSKRT K+ +K+W GFR
Sbjct: 61 LENLIDPNSKRTTKKETSSKKWSAFGFR 88
>gb|AAL87157.1|AF480496_11 putative kinesin light chain gene [Oryza sativa (japonica
cultivar-group)]
Length = 711
Score = 129 bits (323), Expect = 3e-29
Identities = 64/89 (71%), Positives = 73/89 (81%)
Frame = -3
Query: 555 GPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELL 376
GP H DTLGVYSNLA TYDAMGR+ +AIEILE+V+ +REEKLG ANPD +DEKRRLAELL
Sbjct: 619 GPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELL 678
Query: 375 KEAGKTRDRKAKSLENLIDPNSKRTKKEG 289
KEAG+ R RKAKSLENL++ N K G
Sbjct: 679 KEAGRGRSRKAKSLENLLETNPYTVTKRG 707
>gb|AAM13438.1|AF474071_1 similar to A. thaliana protein BAB01483 similar to kinesin light
chain [Hordeum vulgare subsp. vulgare]
Length = 708
Score = 128 bits (322), Expect = 4e-29
Identities = 63/81 (77%), Positives = 71/81 (86%)
Frame = -3
Query: 555 GPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELL 376
GP H DTLGVYSNLA TYDAMGR+ +AIEILEYV+++REEKLG ANPD +DEKRRLAELL
Sbjct: 616 GPYHADTLGVYSNLAGTYDAMGRLDEAIEILEYVVEMREEKLGTANPDVDDEKRRLAELL 675
Query: 375 KEAGKTRDRKAKSLENLIDPN 313
KEAG+ R RKAKSLENL+ N
Sbjct: 676 KEAGRGRSRKAKSLENLLGTN 696
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,318,623
Number of Sequences: 1393205
Number of extensions: 10200334
Number of successful extensions: 32831
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 31405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32773
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
