Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004128A_C01 KMC004128A_c01
(395 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22465.1| chloroquine resistance marker protein, putative [... 30 9.5
>gb|EAA22465.1| chloroquine resistance marker protein, putative [Plasmodium yoelii
yoelii]
Length = 6636
Score = 29.6 bits (65), Expect = 9.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 224 NSLNPFVLNSCSSCTRESVQVHGRPLSEGIFLSLCYI*RMKQNLNIY 84
NS N LN C + H P+ IF LC+I R++++ +IY
Sbjct: 1953 NSHNFITLNDCLQKNMFNNMQHAVPMYTFIFSELCFIARVEKDNSIY 1999
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,880,458
Number of Sequences: 1393205
Number of extensions: 5258079
Number of successful extensions: 8535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8532
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
