Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004127A_C01 KMC004127A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701181.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.27
ref|NP_740964.1| Protein kinase KIN-1 (kin-1) [Caenorhabditis el... 32 6.7
>ref|NP_701181.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496246|gb|AAN35905.1|AE014840_53 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 773
Score = 36.6 bits (83), Expect = 0.27
Identities = 16/61 (26%), Positives = 33/61 (53%)
Frame = -3
Query: 213 HLINFTTGNILWL*LTLQLFCLCHLRNFTTGNILCL*WTLKLFLFVSYSLTMLDVCRIQE 34
+L FT N + + +TL F L +LRN G ++ + + +K+ + + + D+C + +
Sbjct: 550 NLYTFTYNNDIVMNITLLFFILLYLRNIDYGRVIMIYYIMKMMVLIFKIIYNYDICILND 609
Query: 33 Y 31
Y
Sbjct: 610 Y 610
>ref|NP_740964.1| Protein kinase KIN-1 (kin-1) [Caenorhabditis elegans]
gi|22859093|emb|CAD45613.1| Hypothetical protein
ZK909.2c [Caenorhabditis elegans]
Length = 548
Score = 32.0 bits (71), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (52%)
Frame = -1
Query: 452 PPSRTLHSIIPPSFSNCMQNFFPFVTPGKGMK 357
PPS + ++ PPSFS PF TP G K
Sbjct: 164 PPSAAIRTVPPPSFSTFSVRSLPFKTPNCGSK 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,025,238
Number of Sequences: 1393205
Number of extensions: 11037857
Number of successful extensions: 20930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20927
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
