Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004126A_C01 KMC004126A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181370.1| unknown protein; protein id: At2g38360.1 [Arabi... 133 2e-30
emb|CAC80645.1| prenylated Rab receptor 2 [Arabidopsis thaliana] 132 3e-30
ref|NP_196157.1| putative protein; protein id: At5g05380.1 [Arab... 132 3e-30
gb|AAK96760.1| putative protein [Arabidopsis thaliana] gi|179787... 127 1e-28
ref|NP_191170.1| putative protein; protein id: At3g56110.1, supp... 127 1e-28
>ref|NP_181370.1| unknown protein; protein id: At2g38360.1 [Arabidopsis thaliana]
gi|7487157|pir||T02509 hypothetical protein At2g38360
[imported] - Arabidopsis thaliana
gi|3395436|gb|AAC28768.1| unknown protein [Arabidopsis
thaliana]
Length = 220
Score = 133 bits (335), Expect = 2e-30
Identities = 67/96 (69%), Positives = 78/96 (80%)
Frame = -1
Query: 603 FLYLFRPADRPLVLFGRTFTDFETLAILSALTIFVVFLTSVGSVLVSALMLGVAFVCLHG 424
FLYLFRP D+P+VLFGRTF+D ETL L +IFV+FLT VGSVLVSA+M+GVA +C HG
Sbjct: 121 FLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHG 180
Query: 423 AFRVPEDLFLDEQEPSQTTGFLSFLRAPAAVASAAV 316
AFR PEDLFLDEQEP+ TGFLSFL A+ A+ AV
Sbjct: 181 AFRAPEDLFLDEQEPA-ATGFLSFLGGAASSAAPAV 215
>emb|CAC80645.1| prenylated Rab receptor 2 [Arabidopsis thaliana]
Length = 216
Score = 132 bits (332), Expect = 3e-30
Identities = 72/106 (67%), Positives = 85/106 (79%), Gaps = 3/106 (2%)
Frame = -1
Query: 603 FLYLFRPADRPLVLFGRTFTDFETLAILSALTIFVVFLTSVGSVLVSALMLGVAFVCLHG 424
FLYLFRP+D+PLV+ GRTF+D ETL +L LTI VVFLTSVGS+L SALM+G VCLHG
Sbjct: 113 FLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHG 172
Query: 423 AFRVPEDLFLDEQEPSQTTGFLSFL---RAPAAVASAAVPSVTGRV 295
AFRVPEDLFLD+QEP+ TG LSFL AAVA+A+ P+ +GRV
Sbjct: 173 AFRVPEDLFLDDQEPA-NTGLLSFLSGAATSAAVAAASTPA-SGRV 216
>ref|NP_196157.1| putative protein; protein id: At5g05380.1 [Arabidopsis thaliana]
gi|10176750|dbj|BAB09981.1|
emb|CAB87410.1~gene_id:K18I23.19~similar to unknown
protein [Arabidopsis thaliana]
Length = 217
Score = 132 bits (332), Expect = 3e-30
Identities = 72/106 (67%), Positives = 85/106 (79%), Gaps = 3/106 (2%)
Frame = -1
Query: 603 FLYLFRPADRPLVLFGRTFTDFETLAILSALTIFVVFLTSVGSVLVSALMLGVAFVCLHG 424
FLYLFRP+D+PLV+ GRTF+D ETL +L LTI VVFLTSVGS+L SALM+G VCLHG
Sbjct: 114 FLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHG 173
Query: 423 AFRVPEDLFLDEQEPSQTTGFLSFL---RAPAAVASAAVPSVTGRV 295
AFRVPEDLFLD+QEP+ TG LSFL AAVA+A+ P+ +GRV
Sbjct: 174 AFRVPEDLFLDDQEPA-NTGLLSFLSGAATSAAVAAASTPA-SGRV 217
>gb|AAK96760.1| putative protein [Arabidopsis thaliana] gi|17978749|gb|AAL47368.1|
putative protein [Arabidopsis thaliana]
Length = 209
Score = 127 bits (318), Expect = 1e-28
Identities = 69/103 (66%), Positives = 81/103 (77%)
Frame = -1
Query: 603 FLYLFRPADRPLVLFGRTFTDFETLAILSALTIFVVFLTSVGSVLVSALMLGVAFVCLHG 424
FLYLFRP+D+PLV+FGRTF+D ETL L TI VVF+TSVGS+L SALM+GVA VC+HG
Sbjct: 111 FLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHG 170
Query: 423 AFRVPEDLFLDEQEPSQTTGFLSFLRAPAAVASAAVPSVTGRV 295
AF VP+DLFLDEQEP+ G LSFL A A+AA V+GRV
Sbjct: 171 AFVVPDDLFLDEQEPA-NAGLLSFLGGSATSAAAA---VSGRV 209
>ref|NP_191170.1| putative protein; protein id: At3g56110.1, supported by cDNA:
11163., supported by cDNA: gi_15450977, supported by
cDNA: gi_17978748 [Arabidopsis thaliana]
gi|11281603|pir||T47728 hypothetical protein F18O21.70 -
Arabidopsis thaliana gi|7572909|emb|CAB87410.1| putative
protein [Arabidopsis thaliana]
gi|18072821|emb|CAC80650.1| prenylated Rab receptor 6
[Arabidopsis thaliana] gi|21536792|gb|AAM61124.1|
prenylated Rab receptor 2 [Arabidopsis thaliana]
Length = 209
Score = 127 bits (318), Expect = 1e-28
Identities = 69/103 (66%), Positives = 81/103 (77%)
Frame = -1
Query: 603 FLYLFRPADRPLVLFGRTFTDFETLAILSALTIFVVFLTSVGSVLVSALMLGVAFVCLHG 424
FLYLFRP+D+PLV+FGRTF+D ETL L TI VVF+TSVGS+L SALM+GVA VC+HG
Sbjct: 111 FLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHG 170
Query: 423 AFRVPEDLFLDEQEPSQTTGFLSFLRAPAAVASAAVPSVTGRV 295
AF VP+DLFLDEQEP+ G LSFL A A+AA V+GRV
Sbjct: 171 AFVVPDDLFLDEQEPA-NAGLLSFLGGSATSAAAA---VSGRV 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,628,425
Number of Sequences: 1393205
Number of extensions: 12550124
Number of successful extensions: 102679
Number of sequences better than 10.0: 1436
Number of HSP's better than 10.0 without gapping: 70101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94200
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
