Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004125A_C01 KMC004125A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_037446.1| B cell linker protein [Homo sapiens] gi|3406749... 32 4.3
gb|AAH18906.1|AAH18906 B-cell linker [Homo sapiens] 32 4.3
gb|AAC39937.1| B cell linker protein BLNK-s [Homo sapiens] gi|66... 32 4.3
ref|XP_234375.1| similar to checkpoint suppressor 1 [Homo sapien... 31 9.6
>ref|NP_037446.1| B cell linker protein [Homo sapiens] gi|3406749|gb|AAC39936.1| B
cell linker protein BLNK [Homo sapiens]
gi|6642982|gb|AAF20382.1| B cell linker protein BLNK
[Homo sapiens]
Length = 456
Score = 32.0 bits (71), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +1
Query: 202 LKMSQRLIKDIKNQLGGIQNVIRKFTPKLNTKIQKR 309
L+ Q+++ DIKN GGI N I+K K + +R
Sbjct: 15 LRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRR 50
>gb|AAH18906.1|AAH18906 B-cell linker [Homo sapiens]
Length = 456
Score = 32.0 bits (71), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +1
Query: 202 LKMSQRLIKDIKNQLGGIQNVIRKFTPKLNTKIQKR 309
L+ Q+++ DIKN GGI N I+K K + +R
Sbjct: 15 LRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRR 50
>gb|AAC39937.1| B cell linker protein BLNK-s [Homo sapiens]
gi|6642983|gb|AAF20383.1| B cell linker protein BLNK-s
[Homo sapiens]
Length = 433
Score = 32.0 bits (71), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +1
Query: 202 LKMSQRLIKDIKNQLGGIQNVIRKFTPKLNTKIQKR 309
L+ Q+++ DIKN GGI N I+K K + +R
Sbjct: 15 LRQLQKMVHDIKNNEGGIMNKIKKLKVKAPPSVPRR 50
>ref|XP_234375.1| similar to checkpoint suppressor 1 [Homo sapiens] [Rattus
norvegicus]
Length = 348
Score = 30.8 bits (68), Expect = 9.6
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 250 GIQNVIRKFTPKLNTKIQKRIKILDLFCSYEGPIII 357
G+ IR F P L+ K QKRI + L CS+ GP++I
Sbjct: 61 GMTAAIRDFPPLLSGKGQKRIALPQLPCSH-GPVLI 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,368,168
Number of Sequences: 1393205
Number of extensions: 7429414
Number of successful extensions: 11449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11446
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
