Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004123A_C01 KMC004123A_c01
(395 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_571279.1| heat shock protein 47 [Danio rerio] gi|1098627|... 31 4.3
gb|AAD27449.1| envelope glycoprotein [Human immunodeficiency vir... 30 7.3
ref|NP_718932.1| conserved hypothetical protein [Shewanella onei... 30 7.3
>ref|NP_571279.1| heat shock protein 47 [Danio rerio] gi|1098627|gb|AAB06193.1| 47
kDa heat shock protein
Length = 404
Score = 30.8 bits (68), Expect = 4.3
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 217 AIPSINWWLSLVNEKTSRRASSSMIADVSDSD--MIASMNIFVVHWEEKLH 363
AI SIN W + KT+ + DV ++D MI + F HW+EK H
Sbjct: 155 AINSINEWAA----KTTDGKLPEITKDVKNTDGAMIVNAMFFKPHWDEKFH 201
>gb|AAD27449.1| envelope glycoprotein [Human immunodeficiency virus type 1]
Length = 264
Score = 30.0 bits (66), Expect = 7.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 116 YIQETSQLNFLIYNVGNSNNTQITMHILLPHSVK 217
Y T N + YN G SNNT+ I+LP +K
Sbjct: 131 YCNSTQLFNSIWYNTGESNNTEGNDTIILPCRIK 164
>ref|NP_718932.1| conserved hypothetical protein [Shewanella oneidensis MR-1]
gi|24349590|gb|AAN56376.1|AE015774_11 conserved
hypothetical protein [Shewanella oneidensis MR-1]
Length = 190
Score = 30.0 bits (66), Expect = 7.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 297 IRYHGRTSSPRGFFIYKTQPPVD*WYSFTLWGNKMCMVICVLLELPTLYI 148
+RY S +GF IY W+S LWGN + +LL +P L I
Sbjct: 2 VRYIKNMSKLQGFIIYNALSFQCVWWSSILWGNGV-----LLLNIPLLLI 46
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,557,009
Number of Sequences: 1393205
Number of extensions: 6404311
Number of successful extensions: 12270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12270
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
