KMC004121A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC004121A_C01 KMC004121A_c01
gcacttttaaatcccatttttagaagttaagcctgtaaaagagttaataagttcaatcac
aagtacaccacgctcccagaTGATTTGGGCCAAACCATAGAATATGACAAACATATATAC
CCTCGGACTAGAATTTTATGCACATAAAGATTGTACGCTTTGCTGTTAGGAGTACTTTTT
TTGTGTCCACTTAAAACCAAACCTATGTACACTTTTGTAATGCAAAATATAGAGCACTAA
GAGCAGATGGTGCCAATCACTTGAAGGCTATCAAAACTCAATGCCACTATTTATCTGAAT
GGAGAAGGAAGGGCGCCCAACAGTACAAAGGGGTGCGTCAACTCTCAGAACAAGACCATA
GTTCCCCACATTTCCATTCCATTTTGATTTGCCAATAGATACTGAAGCAAATGCAGAAGG
ATATGTCATGAAAGCACATCCACAAATCAAACTAAGTTTCTCTTTAACAGAATGTATAAG
TTCAG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004121A_C01 KMC004121A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564631.2| expressed protein; protein id: At1g53450.1 [Ara... 97 9e-20
gb|AAL31216.1| At1g53450/T3F20_17 [Arabidopsis thaliana] gi|2330... 97 9e-20
pir||E96574 hypothetical protein T3F20.23 [imported] - Arabidops... 97 9e-20
dbj|BAB02649.1| gene_id:T21E2.9~unknown protein [Arabidopsis tha... 96 2e-19
ref|NP_188101.2| unknown protein; protein id: At3g14830.1, suppo... 96 2e-19
>ref|NP_564631.2| expressed protein; protein id: At1g53450.1 [Arabidopsis thaliana]
Length = 453
Score = 97.1 bits (240), Expect = 9e-20
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = -3
Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
E+I S+ + +++ICGCAF +PS FASVS G+SKWNGN+G G+V+R D PL V RPSF
Sbjct: 384 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 443
Query: 303 SIQINSGIEF 274
SIQIN+ EF
Sbjct: 444 SIQINNAFEF 453
>gb|AAL31216.1| At1g53450/T3F20_17 [Arabidopsis thaliana]
gi|23308273|gb|AAN18106.1| At1g53450/T3F20_17
[Arabidopsis thaliana]
Length = 271
Score = 97.1 bits (240), Expect = 9e-20
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = -3
Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
E+I S+ + +++ICGCAF +PS FASVS G+SKWNGN+G G+V+R D PL V RPSF
Sbjct: 202 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 261
Query: 303 SIQINSGIEF 274
SIQIN+ EF
Sbjct: 262 SIQINNAFEF 271
>pir||E96574 hypothetical protein T3F20.23 [imported] - Arabidopsis thaliana
gi|8671881|gb|AAF78444.1|AC018748_23 ESTs gb|AI995079,
gb|AA605353, gb|H37152 come from this gene. [Arabidopsis
thaliana]
Length = 468
Score = 97.1 bits (240), Expect = 9e-20
Identities = 42/70 (60%), Positives = 54/70 (77%)
Frame = -3
Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
E+I S+ + +++ICGCAF +PS FASVS G+SKWNGN+G G+V+R D PL V RPSF
Sbjct: 399 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 458
Query: 303 SIQINSGIEF 274
SIQIN+ EF
Sbjct: 459 SIQINNAFEF 468
>dbj|BAB02649.1| gene_id:T21E2.9~unknown protein [Arabidopsis thaliana]
Length = 483
Score = 95.9 bits (237), Expect = 2e-19
Identities = 41/70 (58%), Positives = 56/70 (79%)
Frame = -3
Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
E+IHS+ + L+LICG A +PSAFASV+ G+SKWNGN+G G+V+R D PL ++G+PSF
Sbjct: 414 EVIHSLSDDLNLICGYALNAHPSAFASVAFGRSKWNGNIGRTGIVVRADTPLASIGQPSF 473
Query: 303 SIQINSGIEF 274
SIQ+N+ EF
Sbjct: 474 SIQLNNAFEF 483
>ref|NP_188101.2| unknown protein; protein id: At3g14830.1, supported by cDNA:
gi_20466192 [Arabidopsis thaliana]
gi|20466193|gb|AAM20414.1| unknown protein [Arabidopsis
thaliana] gi|25083970|gb|AAN72145.1| unknown protein
[Arabidopsis thaliana]
Length = 476
Score = 95.9 bits (237), Expect = 2e-19
Identities = 41/70 (58%), Positives = 56/70 (79%)
Frame = -3
Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
E+IHS+ + L+LICG A +PSAFASV+ G+SKWNGN+G G+V+R D PL ++G+PSF
Sbjct: 407 EVIHSLSDDLNLICGYALNAHPSAFASVAFGRSKWNGNIGRTGIVVRADTPLASIGQPSF 466
Query: 303 SIQINSGIEF 274
SIQ+N+ EF
Sbjct: 467 SIQLNNAFEF 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,271,398
Number of Sequences: 1393205
Number of extensions: 8637303
Number of successful extensions: 19750
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19745
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MR006e03_f |
BP076401 |
1 |
381 |
2 |
MR060b02_f |
BP080575 |
99 |
485 |
|
Lotus japonicus
Kazusa DNA Research Institute