KMC004121A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC004121A_C01 KMC004121A_c01
gcacttttaaatcccatttttagaagttaagcctgtaaaagagttaataagttcaatcac
aagtacaccacgctcccagaTGATTTGGGCCAAACCATAGAATATGACAAACATATATAC
CCTCGGACTAGAATTTTATGCACATAAAGATTGTACGCTTTGCTGTTAGGAGTACTTTTT
TTGTGTCCACTTAAAACCAAACCTATGTACACTTTTGTAATGCAAAATATAGAGCACTAA
GAGCAGATGGTGCCAATCACTTGAAGGCTATCAAAACTCAATGCCACTATTTATCTGAAT
GGAGAAGGAAGGGCGCCCAACAGTACAAAGGGGTGCGTCAACTCTCAGAACAAGACCATA
GTTCCCCACATTTCCATTCCATTTTGATTTGCCAATAGATACTGAAGCAAATGCAGAAGG
ATATGTCATGAAAGCACATCCACAAATCAAACTAAGTTTCTCTTTAACAGAATGTATAAG
TTCAG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC004121A_C01 KMC004121A_c01
         (485 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564631.2| expressed protein; protein id: At1g53450.1 [Ara...    97  9e-20
gb|AAL31216.1| At1g53450/T3F20_17 [Arabidopsis thaliana] gi|2330...    97  9e-20
pir||E96574 hypothetical protein T3F20.23 [imported] - Arabidops...    97  9e-20
dbj|BAB02649.1| gene_id:T21E2.9~unknown protein [Arabidopsis tha...    96  2e-19
ref|NP_188101.2| unknown protein; protein id: At3g14830.1, suppo...    96  2e-19

>ref|NP_564631.2| expressed protein; protein id: At1g53450.1 [Arabidopsis thaliana]
          Length = 453

 Score = 97.1 bits (240), Expect = 9e-20
 Identities = 42/70 (60%), Positives = 54/70 (77%)
 Frame = -3

Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
           E+I S+ + +++ICGCAF  +PS FASVS G+SKWNGN+G  G+V+R D PL  V RPSF
Sbjct: 384 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 443

Query: 303 SIQINSGIEF 274
           SIQIN+  EF
Sbjct: 444 SIQINNAFEF 453

>gb|AAL31216.1| At1g53450/T3F20_17 [Arabidopsis thaliana]
           gi|23308273|gb|AAN18106.1| At1g53450/T3F20_17
           [Arabidopsis thaliana]
          Length = 271

 Score = 97.1 bits (240), Expect = 9e-20
 Identities = 42/70 (60%), Positives = 54/70 (77%)
 Frame = -3

Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
           E+I S+ + +++ICGCAF  +PS FASVS G+SKWNGN+G  G+V+R D PL  V RPSF
Sbjct: 202 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 261

Query: 303 SIQINSGIEF 274
           SIQIN+  EF
Sbjct: 262 SIQINNAFEF 271

>pir||E96574 hypothetical protein T3F20.23 [imported] - Arabidopsis thaliana
           gi|8671881|gb|AAF78444.1|AC018748_23 ESTs gb|AI995079,
           gb|AA605353, gb|H37152 come from this gene. [Arabidopsis
           thaliana]
          Length = 468

 Score = 97.1 bits (240), Expect = 9e-20
 Identities = 42/70 (60%), Positives = 54/70 (77%)
 Frame = -3

Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
           E+I S+ + +++ICGCAF  +PS FASVS G+SKWNGN+G  G+V+R D PL  V RPSF
Sbjct: 399 EVIQSLNDNINMICGCAFTAHPSTFASVSFGRSKWNGNIGRTGIVVRADTPLPNVARPSF 458

Query: 303 SIQINSGIEF 274
           SIQIN+  EF
Sbjct: 459 SIQINNAFEF 468

>dbj|BAB02649.1| gene_id:T21E2.9~unknown protein [Arabidopsis thaliana]
          Length = 483

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 41/70 (58%), Positives = 56/70 (79%)
 Frame = -3

Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
           E+IHS+ + L+LICG A   +PSAFASV+ G+SKWNGN+G  G+V+R D PL ++G+PSF
Sbjct: 414 EVIHSLSDDLNLICGYALNAHPSAFASVAFGRSKWNGNIGRTGIVVRADTPLASIGQPSF 473

Query: 303 SIQINSGIEF 274
           SIQ+N+  EF
Sbjct: 474 SIQLNNAFEF 483

>ref|NP_188101.2| unknown protein; protein id: At3g14830.1, supported by cDNA:
           gi_20466192 [Arabidopsis thaliana]
           gi|20466193|gb|AAM20414.1| unknown protein [Arabidopsis
           thaliana] gi|25083970|gb|AAN72145.1| unknown protein
           [Arabidopsis thaliana]
          Length = 476

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 41/70 (58%), Positives = 56/70 (79%)
 Frame = -3

Query: 483 ELIHSVKEKLSLICGCAFMTYPSAFASVSIGKSKWNGNVGNYGLVLRVDAPLCTVGRPSF 304
           E+IHS+ + L+LICG A   +PSAFASV+ G+SKWNGN+G  G+V+R D PL ++G+PSF
Sbjct: 407 EVIHSLSDDLNLICGYALNAHPSAFASVAFGRSKWNGNIGRTGIVVRADTPLASIGQPSF 466

Query: 303 SIQINSGIEF 274
           SIQ+N+  EF
Sbjct: 467 SIQLNNAFEF 476

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,271,398
Number of Sequences: 1393205
Number of extensions: 8637303
Number of successful extensions: 19750
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19745
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MR006e03_f BP076401 1 381
2 MR060b02_f BP080575 99 485




Lotus japonicus
Kazusa DNA Research Institute