Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004120A_C01 KMC004120A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21153.1| GDSL-motif lipase/hydrolase-like protein [Oryza ... 37 0.18
ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g296... 35 0.51
gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana] 35 0.51
ref|NP_565021.1| hypothetical protein; protein id: At1g71691.1 [... 33 2.5
ref|NP_719640.1| MSHA biogenesis protein MshN, putative [Shewane... 32 5.6
>dbj|BAB21153.1| GDSL-motif lipase/hydrolase-like protein [Oryza sativa (japonica
cultivar-group)] gi|20161163|dbj|BAB90091.1| GDSL-motif
lipase/hydrolase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 363
Score = 36.6 bits (83), Expect = 0.18
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 512 DGIHTTEAANILTATVSYSTSDPNIAHPMNIQKLLS 405
D H +EAANI+ SY PN A+PM+I L S
Sbjct: 327 DAFHPSEAANIIVGRRSYRAESPNDAYPMDIATLAS 362
>ref|NP_174260.1| lipase/hydrolase, putative; protein id: At1g29670.1, supported by
cDNA: 23556., supported by cDNA: gi_18086454
[Arabidopsis thaliana] gi|25336248|pir||A86420 probable
lipase/hydrolase, 118270-120144 [imported] - Arabidopsis
thaliana gi|12323546|gb|AAG51758.1|AC068667_37
lipase/hydrolase, putative; 118270-120144 [Arabidopsis
thaliana] gi|18086455|gb|AAL57681.1| At1g29670/F15D2_22
[Arabidopsis thaliana]
Length = 363
Score = 35.0 bits (79), Expect = 0.51
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 512 DGIHTTEAANILTATVSYSTSDPNIAHPMNIQKL 411
D H TEAAN++ A SY+ + A+PM+I +L
Sbjct: 327 DAFHPTEAANVIIARRSYNAQSASDAYPMDISRL 360
>gb|AAM64368.1| lipase/hydrolase, putative [Arabidopsis thaliana]
Length = 363
Score = 35.0 bits (79), Expect = 0.51
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 512 DGIHTTEAANILTATVSYSTSDPNIAHPMNIQKL 411
D H TEAAN++ A SY+ + A+PM+I +L
Sbjct: 327 DAFHPTEAANVIIARRSYNAQSASDAYPMDISRL 360
>ref|NP_565021.1| hypothetical protein; protein id: At1g71691.1 [Arabidopsis
thaliana] gi|25336261|pir||G96738 hypothetical protein
F14O23.4 [imported] - Arabidopsis thaliana
gi|7239493|gb|AAF43219.1|AC012654_3 Strong similarity to
the putative GDSL-motif containing lipase/hydrolase
F26A9.7 from A. thaliana on BAC gb|AC016163.
[Arabidopsis thaliana]
gi|12323716|gb|AAG51812.1|AC016163_1 putative GDSL-motif
lipase/hydrolase; 24593-26678 [Arabidopsis thaliana]
Length = 384
Score = 32.7 bits (73), Expect = 2.5
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -3
Query: 512 DGIHTTEAANILTATVSYSTSDPNIAHPMNIQKLLSSN 399
D H TE N++ A +++ D +A+P+NIQ+L S N
Sbjct: 348 DAFHPTEKVNLIMAKKAFA-GDRTVAYPINIQQLASLN 384
>ref|NP_719640.1| MSHA biogenesis protein MshN, putative [Shewanella oneidensis MR-1]
gi|24350492|gb|AAN57084.1|AE015842_4 MSHA biogenesis
protein MshN, putative [Shewanella oneidensis MR-1]
Length = 429
Score = 31.6 bits (70), Expect = 5.6
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -2
Query: 252 SFNKWMRICLVQSFPGYLSFGGLHLYSFRASY 157
S KW+ ICL+ L GGL +Y+F+ASY
Sbjct: 36 SSRKWLAICLLS-----LLLGGLSMYAFQASY 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,782,033
Number of Sequences: 1393205
Number of extensions: 8701012
Number of successful extensions: 15819
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15816
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
