Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004118A_C01 KMC004118A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568041.1| protein kinase like protein; protein id: At4g38... 117 1e-25
ref|NP_195303.2| putative protein; protein id: At4g35780.1, supp... 113 1e-24
pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thalian... 102 3e-21
pir||T05675 hypothetical protein F20M13.30 - Arabidopsis thalian... 99 2e-20
pir||T04688 hypothetical protein F4B14.50 - Arabidopsis thaliana 83 2e-15
>ref|NP_568041.1| protein kinase like protein; protein id: At4g38470.1 [Arabidopsis
thaliana]
Length = 575
Score = 117 bits (292), Expect = 1e-25
Identities = 57/86 (66%), Positives = 70/86 (81%), Gaps = 5/86 (5%)
Frame = -2
Query: 510 PLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDSTLRPDFSEIIDILQKLAKEVGDD 331
PLQAA+GVVQKGLRPTIPKNTHPK ELLER W+ DST RPDFSEII+ LQ++AKEVG++
Sbjct: 490 PLQAAVGVVQKGLRPTIPKNTHPKLAELLERLWEHDSTQRPDFSEIIEQLQEIAKEVGEE 549
Query: 330 GEDRRRDKS---GGFLSALRRG--HH 268
GE++++ + GG +ALRR HH
Sbjct: 550 GEEKKKSSTGLGGGIFAALRRSTTHH 575
>ref|NP_195303.2| putative protein; protein id: At4g35780.1, supported by cDNA:
gi_20260235 [Arabidopsis thaliana]
gi|20260236|gb|AAM13016.1| putative protein [Arabidopsis
thaliana] gi|22136520|gb|AAM91338.1| putative protein
[Arabidopsis thaliana]
Length = 570
Score = 113 bits (282), Expect = 1e-24
Identities = 52/80 (65%), Positives = 65/80 (81%)
Frame = -2
Query: 510 PLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDSTLRPDFSEIIDILQKLAKEVGDD 331
PLQAA+GVVQKGLRP IPK THPK ELLE+ WQQD LRP+F+EII++L +L +EVGDD
Sbjct: 492 PLQAAVGVVQKGLRPKIPKETHPKLTELLEKCWQQDPALRPNFAEIIEMLNQLIREVGDD 551
Query: 330 GEDRRRDKSGGFLSALRRGH 271
+R +DK GG+ S L++GH
Sbjct: 552 --ERHKDKHGGYFSGLKKGH 569
>pir||T04683 hypothetical protein F8D20.290 - Arabidopsis thaliana
gi|3367596|emb|CAA20048.1| putative protein [Arabidopsis
thaliana] gi|7270530|emb|CAB81487.1| putative protein
[Arabidopsis thaliana]
Length = 553
Score = 102 bits (254), Expect = 3e-21
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = -2
Query: 510 PLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDSTLRPDFSEIIDILQKLAKEVGDD 331
PLQAA+GVVQKGLRP IPK THPK ELLE+ WQQD LRP+F+EII++L +L +EV D
Sbjct: 475 PLQAAVGVVQKGLRPKIPKETHPKLTELLEKCWQQDPALRPNFAEIIEMLNQLIREVID- 533
Query: 330 GEDRRRDKSGGFLSALRRGH 271
+DK GG+ S L++GH
Sbjct: 534 -LSLHKDKHGGYFSGLKKGH 552
>pir||T05675 hypothetical protein F20M13.30 - Arabidopsis thaliana
gi|4467134|emb|CAB37503.1| protein kinase like protein
[Arabidopsis thaliana] gi|7270830|emb|CAB80511.1|
protein kinase like protein [Arabidopsis thaliana]
Length = 545
Score = 99.4 bits (246), Expect = 2e-20
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
Frame = -2
Query: 480 KGLRPTIPKNTHPKFVELLERSWQQDSTLRPDFSEIIDILQKLAKEVGDDGEDRRRDKS- 304
KGLRPTIPKNTHPK ELLER W+ DST RPDFSEII+ LQ++AKEVG++GE++++ +
Sbjct: 470 KGLRPTIPKNTHPKLAELLERLWEHDSTQRPDFSEIIEQLQEIAKEVGEEGEEKKKSSTG 529
Query: 303 --GGFLSALRRG--HH 268
GG +ALRR HH
Sbjct: 530 LGGGIFAALRRSTTHH 545
>pir||T04688 hypothetical protein F4B14.50 - Arabidopsis thaliana
Length = 509
Score = 83.2 bits (204), Expect = 2e-15
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = -2
Query: 480 KGLRPTIPKNTHPKFVELLERSWQQDSTLRPDFSEIIDILQKLAKEVGDDGEDRRRDKSG 301
+GLRP IPK THPK ELLE+ WQQD LRP+F+EII++L +L +EV D +DK G
Sbjct: 441 EGLRPKIPKETHPKLTELLEKCWQQDPALRPNFAEIIEMLNQLIREVID--LSLHKDKHG 498
Query: 300 GFLSALRRGH 271
G+ S L++GH
Sbjct: 499 GYFSGLKKGH 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,755,495
Number of Sequences: 1393205
Number of extensions: 8612770
Number of successful extensions: 22728
Number of sequences better than 10.0: 434
Number of HSP's better than 10.0 without gapping: 22186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22720
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
