Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004117A_C01 KMC004117A_c01
(826 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94975.1| AMP-binding protein [Arabidopsis thaliana] 82 1e-29
ref|NP_188316.1| AMP-binding protein, putative; protein id: At3g... 82 1e-29
ref|NP_745690.1| AMP-binding domain protein [Pseudomonas putida ... 61 8e-17
pir||G86338 protein F2D10.4 [imported] - Arabidopsis thaliana gi... 59 1e-16
gb|AAF79607.1|AC027665_8 F5M15.12 [Arabidopsis thaliana] 59 1e-16
>dbj|BAA94975.1| AMP-binding protein [Arabidopsis thaliana]
Length = 571
Score = 82.0 bits (201), Expect(2) = 1e-29
Identities = 38/48 (79%), Positives = 42/48 (87%)
Frame = -1
Query: 676 FGRAKMPAYWVPKSVVFGLLPKTATGKVQKHLLRAKAKEMGPVRTSKL 533
F R K+PAYWVPKSVVFG LPKTATGK+QKH+LR KAKEMGPV S+L
Sbjct: 524 FCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPVPRSRL 571
Score = 70.5 bits (171), Expect(2) = 1e-29
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = -3
Query: 821 LYSHPVILETSVVARPDERWGESPCAFVTLKPGVDASNEQRLVEDILKF 675
+Y HP +LE SVVARPDERW ESPCAFVTLK + ++ +L +DI+KF
Sbjct: 476 VYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKF 524
>ref|NP_188316.1| AMP-binding protein, putative; protein id: At3g16910.1, supported
by cDNA: gi_18086378, supported by cDNA: gi_19699127,
supported by cDNA: gi_20799722 [Arabidopsis thaliana]
gi|18086379|gb|AAL57649.1| AT3g16910/K14A17_3
[Arabidopsis thaliana] gi|19699128|gb|AAL90930.1|
AT3g16910/K14A17_3 [Arabidopsis thaliana]
gi|20799723|gb|AAM28624.1|AF503766_1 adenosine
monophosphate binding protein 7 AMPBP7 [Arabidopsis
thaliana]
Length = 569
Score = 82.0 bits (201), Expect(2) = 1e-29
Identities = 38/48 (79%), Positives = 42/48 (87%)
Frame = -1
Query: 676 FGRAKMPAYWVPKSVVFGLLPKTATGKVQKHLLRAKAKEMGPVRTSKL 533
F R K+PAYWVPKSVVFG LPKTATGK+QKH+LR KAKEMGPV S+L
Sbjct: 522 FCREKLPAYWVPKSVVFGPLPKTATGKIQKHILRTKAKEMGPVPRSRL 569
Score = 70.5 bits (171), Expect(2) = 1e-29
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = -3
Query: 821 LYSHPVILETSVVARPDERWGESPCAFVTLKPGVDASNEQRLVEDILKF 675
+Y HP +LE SVVARPDERW ESPCAFVTLK + ++ +L +DI+KF
Sbjct: 474 VYHHPAVLEASVVARPDERWQESPCAFVTLKSDYEKHDQNKLAQDIMKF 522
>ref|NP_745690.1| AMP-binding domain protein [Pseudomonas putida KT2440]
gi|24985214|gb|AAN69154.1|AE016549_3 AMP-binding domain
protein [Pseudomonas putida KT2440]
Length = 540
Score = 60.8 bits (146), Expect(2) = 8e-17
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -3
Query: 821 LYSHPVILETSVVARPDERWGESPCAFVTLKPGVDASNE 705
LY H +LE +VVARPDE+WGE+PCAFV LKPG + + E
Sbjct: 457 LYKHSAVLEAAVVARPDEKWGETPCAFVALKPGREDTRE 495
Score = 48.5 bits (114), Expect(2) = 8e-17
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = -1
Query: 682 SSFGRAKMPAYWVPKSVVFGLLPKTATGKVQKHLLRAKAKEM 557
+S+ R + + VPK+VVFG LPKT+TGK+QK++LR +AK +
Sbjct: 499 TSWCREHLAGFKVPKTVVFGELPKTSTGKIQKYVLRDRAKAL 540
>pir||G86338 protein F2D10.4 [imported] - Arabidopsis thaliana
gi|8886956|gb|AAF80642.1|AC069251_35 F2D10.4
[Arabidopsis thaliana]
Length = 581
Score = 58.9 bits (141), Expect(2) = 1e-16
Identities = 26/41 (63%), Positives = 32/41 (77%)
Frame = -3
Query: 824 TLYSHPVILETSVVARPDERWGESPCAFVTLKPGVDASNEQ 702
TL++HP +LE +VVARPDE WGE+ CAFV LK G AS E+
Sbjct: 487 TLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASAEE 527
Score = 50.1 bits (118), Expect(2) = 1e-16
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -1
Query: 679 SFGRAKMPAYWVPKSVVFGLLPKTATGKVQKHLLRAKAKEM 557
S+ R ++P Y P+S+VF LPKT+TGKVQK +LR KAK +
Sbjct: 530 SYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKAL 570
>gb|AAF79607.1|AC027665_8 F5M15.12 [Arabidopsis thaliana]
Length = 579
Score = 58.9 bits (141), Expect(2) = 1e-16
Identities = 26/41 (63%), Positives = 32/41 (77%)
Frame = -3
Query: 824 TLYSHPVILETSVVARPDERWGESPCAFVTLKPGVDASNEQ 702
TL++HP +LE +VVARPDE WGE+ CAFV LK G AS E+
Sbjct: 485 TLFTHPCVLEAAVVARPDEYWGETACAFVKLKDGSKASAEE 525
Score = 50.1 bits (118), Expect(2) = 1e-16
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -1
Query: 679 SFGRAKMPAYWVPKSVVFGLLPKTATGKVQKHLLRAKAKEM 557
S+ R ++P Y P+S+VF LPKT+TGKVQK +LR KAK +
Sbjct: 528 SYCRDRLPHYMAPRSIVFEDLPKTSTGKVQKFVLRTKAKAL 568
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 710,984,310
Number of Sequences: 1393205
Number of extensions: 15310167
Number of successful extensions: 30801
Number of sequences better than 10.0: 564
Number of HSP's better than 10.0 without gapping: 29236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30780
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
