Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004116A_C01 KMC004116A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF22293.1|AF180734_1 dynamin-like protein 5 [Arabidopsis tha... 169 3e-41
ref|NP_172936.1| dynamin, putative; protein id: At1g14830.1, sup... 169 3e-41
gb|AAL92170.1|AF488808_1 dynamin-like protein C [Arabidopsis tha... 169 3e-41
gb|AAM61645.1| dynamin, putative [Arabidopsis thaliana] 167 1e-40
gb|AAF79238.1|AC006917_23 F10B6.23 [Arabidopsis thaliana] 155 4e-37
>gb|AAF22293.1|AF180734_1 dynamin-like protein 5 [Arabidopsis thaliana]
Length = 614
Score = 169 bits (427), Expect = 3e-41
Identities = 79/97 (81%), Positives = 90/97 (92%)
Frame = -2
Query: 567 YTDTHLRKIGSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKL 388
Y+D H RKIGSNV+AYINMVCDTL+N++PKAVVYCQVREAKRSLLN+FY QVG+KEKEKL
Sbjct: 518 YSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKL 577
Query: 387 GAMLDEDPALMEKRTQIAKRLELYQPARDDIDSVAWK 277
GAMLDEDP LME+R +AKRLELY+ ARDDID+VAWK
Sbjct: 578 GAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAWK 614
>ref|NP_172936.1| dynamin, putative; protein id: At1g14830.1, supported by cDNA:
12880., supported by cDNA: gi_19569771, supported by
cDNA: gi_6651402 [Arabidopsis thaliana]
gi|11991506|emb|CAC19656.1| dynamin-like protein DLP1
[Arabidopsis thaliana] gi|14532662|gb|AAK64059.1|
putative dynamin protein [Arabidopsis thaliana]
gi|23297723|gb|AAN12911.1| putative dynamin protein
[Arabidopsis thaliana]
Length = 614
Score = 169 bits (427), Expect = 3e-41
Identities = 79/97 (81%), Positives = 90/97 (92%)
Frame = -2
Query: 567 YTDTHLRKIGSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKL 388
Y+D H RKIGSNV+AYINMVCDTL+N++PKAVVYCQVREAKRSLLN+FY QVG+KEKEKL
Sbjct: 518 YSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKL 577
Query: 387 GAMLDEDPALMEKRTQIAKRLELYQPARDDIDSVAWK 277
GAMLDEDP LME+R +AKRLELY+ ARDDID+VAWK
Sbjct: 578 GAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAWK 614
>gb|AAL92170.1|AF488808_1 dynamin-like protein C [Arabidopsis thaliana]
Length = 611
Score = 169 bits (427), Expect = 3e-41
Identities = 79/97 (81%), Positives = 90/97 (92%)
Frame = -2
Query: 567 YTDTHLRKIGSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKL 388
Y+D H RKIGSNV+AYINMVCDTL+N++PKAVVYCQVREAKRSLLN+FY QVG+KEKEKL
Sbjct: 515 YSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKL 574
Query: 387 GAMLDEDPALMEKRTQIAKRLELYQPARDDIDSVAWK 277
GAMLDEDP LME+R +AKRLELY+ ARDDID+VAWK
Sbjct: 575 GAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAWK 611
>gb|AAM61645.1| dynamin, putative [Arabidopsis thaliana]
Length = 614
Score = 167 bits (422), Expect = 1e-40
Identities = 78/97 (80%), Positives = 89/97 (91%)
Frame = -2
Query: 567 YTDTHLRKIGSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKL 388
Y+D H RKIGSN +AYINMVCDTL+N++PKAVVYCQVREAKRSLLN+FY QVG+KEKEKL
Sbjct: 518 YSDNHFRKIGSNXSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKL 577
Query: 387 GAMLDEDPALMEKRTQIAKRLELYQPARDDIDSVAWK 277
GAMLDEDP LME+R +AKRLELY+ ARDDID+VAWK
Sbjct: 578 GAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAWK 614
>gb|AAF79238.1|AC006917_23 F10B6.23 [Arabidopsis thaliana]
Length = 749
Score = 155 bits (391), Expect = 4e-37
Identities = 73/88 (82%), Positives = 83/88 (93%)
Frame = -2
Query: 540 GSNVNAYINMVCDTLKNTIPKAVVYCQVREAKRSLLNYFYVQVGKKEKEKLGAMLDEDPA 361
GSNV+AYINMVCDTL+N++PKAVVYCQVREAKRSLLN+FY QVG+KEKEKLGAMLDEDP
Sbjct: 662 GSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQ 721
Query: 360 LMEKRTQIAKRLELYQPARDDIDSVAWK 277
LME+R +AKRLELY+ ARDDID+VAWK
Sbjct: 722 LMERRGTLAKRLELYKQARDDIDAVAWK 749
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,935,286
Number of Sequences: 1393205
Number of extensions: 9514011
Number of successful extensions: 23388
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 22915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23378
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
